Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.35■□□□□ 0.05
RFX3P48380 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.35■□□□□ 0.05
RFX3P48380 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.35■□□□□ 0.05
RFX3P48380 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
RFX3P48380 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.35■□□□□ 0.05
RFX3P48380 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC15.35■□□□□ 0.05
RFX3P48380 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
RFX3P48380 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
RFX3P48380 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.35■□□□□ 0.05
RFX3P48380 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.35■□□□□ 0.05
RFX3P48380 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.35■□□□□ 0.05
RFX3P48380 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.35■□□□□ 0.05
RFX3P48380 AP000347.1-202ENST00000435868 847 ntBASIC15.35■□□□□ 0.05
RFX3P48380 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC15.35■□□□□ 0.05
RFX3P48380 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.35■□□□□ 0.05
RFX3P48380 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.35■□□□□ 0.05
RFX3P48380 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.35■□□□□ 0.05
RFX3P48380 AC068137.2-201ENST00000605408 478 ntBASIC15.35■□□□□ 0.05
RFX3P48380 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.35■□□□□ 0.05
RFX3P48380 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.35■□□□□ 0.05
RFX3P48380 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.35■□□□□ 0.05
RFX3P48380 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.35■□□□□ 0.05
RFX3P48380 AC022188.1-201ENST00000620960 1664 ntBASIC15.35■□□□□ 0.05
RFX3P48380 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RFX3P48380 ME2P1-201ENST00000426028 1970 ntBASIC15.35■□□□□ 0.05
RFX3P48380 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
RFX3P48380 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RFX3P48380 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RFX3P48380 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.34■□□□□ 0.05
RFX3P48380 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
RFX3P48380 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.34■□□□□ 0.05
RFX3P48380 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.34■□□□□ 0.05
RFX3P48380 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.34■□□□□ 0.05
RFX3P48380 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
RFX3P48380 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 CYP2T1P-202ENST00000641596 2535 ntBASIC15.34■□□□□ 0.05
RFX3P48380 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.34■□□□□ 0.05
RFX3P48380 MIR574-201ENST00000385209 96 ntBASIC15.34■□□□□ 0.05
RFX3P48380 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.34■□□□□ 0.05
RFX3P48380 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.34■□□□□ 0.05
RFX3P48380 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.34■□□□□ 0.05
RFX3P48380 AC074386.1-202ENST00000463561 864 ntBASIC15.34■□□□□ 0.05
RFX3P48380 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.34■□□□□ 0.05
RFX3P48380 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
RFX3P48380 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.34■□□□□ 0.05
RFX3P48380 AC021097.1-201ENST00000607902 574 ntBASIC15.34■□□□□ 0.05
RFX3P48380 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RFX3P48380 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
RFX3P48380 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.34■□□□□ 0.05
RFX3P48380 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RFX3P48380 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RFX3P48380 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
RFX3P48380 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
RFX3P48380 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RFX3P48380 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.34■□□□□ 0.05
RFX3P48380 AC103702.1-201ENST00000548801 2630 ntBASIC15.33■□□□□ 0.05
RFX3P48380 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.05
RFX3P48380 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.33■□□□□ 0.05
RFX3P48380 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
RFX3P48380 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
RFX3P48380 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
RFX3P48380 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
RFX3P48380 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
RFX3P48380 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms