Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RFX1P22670 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
RFX1P22670 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RFX1P22670 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.71■□□□□ 0.43
RFX1P22670 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX1P22670 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
RFX1P22670 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.7■□□□□ 0.42
RFX1P22670 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.7■□□□□ 0.42
RFX1P22670 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX1P22670 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
RFX1P22670 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 COPE-202ENST00000349893 948 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX1P22670 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
RFX1P22670 AC236430.1-201ENST00000402231 743 ntBASIC17.7■□□□□ 0.42
RFX1P22670 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.7■□□□□ 0.42
RFX1P22670 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
RFX1P22670 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX1P22670 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 KRT18P34-201ENST00000488218 1270 ntBASIC17.7■□□□□ 0.42
RFX1P22670 IGHV3-42-201ENST00000520410 361 ntBASIC17.7■□□□□ 0.42
RFX1P22670 FAM86C2P-203ENST00000528684 1004 ntBASIC17.7■□□□□ 0.42
RFX1P22670 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX1P22670 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.7■□□□□ 0.42
RFX1P22670 AC026120.1-201ENST00000611536 926 ntBASIC17.7■□□□□ 0.42
RFX1P22670 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX1P22670 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX1P22670 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX1P22670 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
RFX1P22670 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX1P22670 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
RFX1P22670 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX1P22670 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
RFX1P22670 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.7■□□□□ 0.42
RFX1P22670 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RFX1P22670 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 FER1L4-210ENST00000615531 5998 ntBASIC17.69■□□□□ 0.42
RFX1P22670 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
RFX1P22670 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 AC024909.3-201ENST00000611513 2257 ntBASIC17.69■□□□□ 0.42
RFX1P22670 AC092919.2-201ENST00000623631 1645 ntBASIC17.69■□□□□ 0.42
RFX1P22670 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.69■□□□□ 0.42
RFX1P22670 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.69■□□□□ 0.42
RFX1P22670 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
RFX1P22670 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
RFX1P22670 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.69■□□□□ 0.42
RFX1P22670 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
RFX1P22670 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.69■□□□□ 0.42
RFX1P22670 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC17.69■□□□□ 0.42
RFX1P22670 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.69■□□□□ 0.42
RFX1P22670 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 MIR943-201ENST00000401286 94 ntBASIC17.69■□□□□ 0.42
RFX1P22670 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.69■□□□□ 0.42
RFX1P22670 KRT18P32-201ENST00000424695 1287 ntBASIC17.69■□□□□ 0.42
RFX1P22670 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 AC093724.1-201ENST00000448659 1027 ntBASIC17.69■□□□□ 0.42
RFX1P22670 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.69■□□□□ 0.42
RFX1P22670 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.69■□□□□ 0.42
RFX1P22670 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
RFX1P22670 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.69■□□□□ 0.42
RFX1P22670 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.69■□□□□ 0.42
RFX1P22670 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.69■□□□□ 0.42
RFX1P22670 AC005225.4-201ENST00000557330 545 ntBASIC17.69■□□□□ 0.42
RFX1P22670 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.69■□□□□ 0.42
RFX1P22670 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC17.69■□□□□ 0.42
RFX1P22670 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
RFX1P22670 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms