Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC18.67■□□□□ 0.58
COL2A1P02458 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.67■□□□□ 0.58
COL2A1P02458 AL033527.4-201ENST00000641026 673 ntBASIC18.67■□□□□ 0.58
COL2A1P02458 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC18.67■□□□□ 0.58
COL2A1P02458 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL2A1P02458 AC005332.8-201ENST00000622750 2735 ntBASIC18.67■□□□□ 0.58
COL2A1P02458 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL2A1P02458 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.67■□□□□ 0.58
COL2A1P02458 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.66■□□□□ 0.58
COL2A1P02458 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.66■□□□□ 0.58
COL2A1P02458 AL133267.1-201ENST00000398220 340 ntBASIC18.66■□□□□ 0.58
COL2A1P02458 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC18.66■□□□□ 0.58
COL2A1P02458 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 AC104989.1-201ENST00000519711 778 ntBASIC18.66■□□□□ 0.58
COL2A1P02458 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC18.66■□□□□ 0.58
COL2A1P02458 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC18.66■□□□□ 0.58
COL2A1P02458 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
COL2A1P02458 AC133552.6-201ENST00000613406 534 ntBASIC18.66■□□□□ 0.58
COL2A1P02458 MIR6775-201ENST00000617557 69 ntBASIC18.66■□□□□ 0.58
COL2A1P02458 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL2A1P02458 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL2A1P02458 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.66■□□□□ 0.58
COL2A1P02458 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.66■□□□□ 0.58
COL2A1P02458 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
COL2A1P02458 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL2A1P02458 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.65■□□□□ 0.58
COL2A1P02458 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 C1QBPP1-201ENST00000400117 770 ntBASIC18.65■□□□□ 0.58
COL2A1P02458 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.65■□□□□ 0.58
COL2A1P02458 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COL2A1P02458 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC18.65■□□□□ 0.58
COL2A1P02458 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC18.65■□□□□ 0.58
COL2A1P02458 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.65■□□□□ 0.58
COL2A1P02458 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC18.65■□□□□ 0.58
COL2A1P02458 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC18.65■□□□□ 0.58
COL2A1P02458 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC18.65■□□□□ 0.58
COL2A1P02458 APRT-204ENST00000563655 709 ntTSL 5 BASIC18.65■□□□□ 0.58
COL2A1P02458 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.65■□□□□ 0.58
COL2A1P02458 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.65■□□□□ 0.58
COL2A1P02458 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.65■□□□□ 0.58
COL2A1P02458 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.65■□□□□ 0.58
COL2A1P02458 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 AC080080.1-201ENST00000625121 2420 ntBASIC18.65■□□□□ 0.58
COL2A1P02458 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COL2A1P02458 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.65■□□□□ 0.58
COL2A1P02458 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL2A1P02458 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL2A1P02458 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
COL2A1P02458 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.65■□□□□ 0.58
COL2A1P02458 PDIA3P1-201ENST00000471856 1510 ntBASIC18.65■□□□□ 0.58
COL2A1P02458 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC18.65■□□□□ 0.58
COL2A1P02458 TEX30-203ENST00000376022 828 ntTSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms