Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV7S3A2A0A539 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TCRBV7S3A2A0A539 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
TCRBV7S3A2A0A539 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
TCRBV7S3A2A0A539 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV7S3A2A0A539 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV7S3A2A0A539 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV7S3A2A0A539 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TCRBV7S3A2A0A539 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TCRBV7S3A2A0A539 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 AL662844.1-201ENST00000546340 181 ntBASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 AC145285.3-201ENST00000564603 959 ntBASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TCRBV7S3A2A0A539 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 AP002414.2-201ENST00000591780 3365 ntBASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.52■□□□□ 0.23
TCRBV7S3A2A0A539 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 TSPY26P-202ENST00000565928 3884 ntBASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 AC002347.1-201ENST00000569543 541 ntBASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.51■□□□□ 0.23
TCRBV7S3A2A0A539 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
TCRBV7S3A2A0A539 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms