Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 KRT8P23-201ENST00000560090 1207 ntBASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 MIR4321-201ENST00000592276 80 ntBASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 AC022145.2-201ENST00000598203 171 ntBASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 AC010491.1-201ENST00000563101 2797 ntBASIC16.89■□□□□ 0.29
AP4E1Q9UPM8 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 CICP6-201ENST00000457191 2729 ntBASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 AC069335.1-201ENST00000489972 472 ntBASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 AC105339.1-204ENST00000636249 355 ntBASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
AP4E1Q9UPM8 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 CDC14C-201ENST00000428251 1719 ntBASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 AL365203.3-201ENST00000609742 2057 ntBASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 UXT-AS1-201ENST00000590504 1525 ntBASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 MIR346-201ENST00000362234 95 ntBASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.87■□□□□ 0.29
AP4E1Q9UPM8 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms