Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC011676.5-201ENST00000624864 2660 ntBASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
SHROOM4Q9ULL8 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 AL442647.2-201ENST00000429864 857 ntBASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 RARRES2P5-201ENST00000564013 466 ntBASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 PIGL-212ENST00000581006 554 ntTSL 4 BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 CA12-203ENST00000422263 2556 ntTSL 2 BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 AC009053.2-201ENST00000563701 2365 ntBASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SHROOM4Q9ULL8 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC30.57■■■□□ 2.49
SHROOM4Q9ULL8 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 RAD18-204ENST00000418463 563 ntTSL 4 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 RAD18-205ENST00000421052 582 ntTSL 3 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 AP000812.2-201ENST00000538934 718 ntBASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 BRWD1P1-201ENST00000401091 371 ntBASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 AC026979.3-201ENST00000607315 403 ntBASIC30.57■■■□□ 2.48
SHROOM4Q9ULL8 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
SHROOM4Q9ULL8 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
SHROOM4Q9ULL8 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
SHROOM4Q9ULL8 FLJ38576-201ENST00000623820 2459 ntBASIC30.56■■■□□ 2.48
SHROOM4Q9ULL8 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC30.56■■■□□ 2.48
SHROOM4Q9ULL8 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
SHROOM4Q9ULL8 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
SHROOM4Q9ULL8 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
SHROOM4Q9ULL8 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC30.56■■■□□ 2.48
SHROOM4Q9ULL8 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
SHROOM4Q9ULL8 AC243960.2-201ENST00000600996 747 ntBASIC30.56■■■□□ 2.48
SHROOM4Q9ULL8 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC30.56■■■□□ 2.48
SHROOM4Q9ULL8 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 U82695.1-201ENST00000635752 1889 ntBASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
SHROOM4Q9ULL8 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
SHROOM4Q9ULL8 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC30.54■■■□□ 2.48
SHROOM4Q9ULL8 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC30.54■■■□□ 2.48
SHROOM4Q9ULL8 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
SHROOM4Q9ULL8 RPL7P3-201ENST00000441388 714 ntBASIC30.54■■■□□ 2.48
SHROOM4Q9ULL8 C2orf69P2-201ENST00000562032 1123 ntBASIC30.54■■■□□ 2.48
SHROOM4Q9ULL8 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
SHROOM4Q9ULL8 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC30.54■■■□□ 2.48
SHROOM4Q9ULL8 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC30.54■■■□□ 2.48
SHROOM4Q9ULL8 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SHROOM4Q9ULL8 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
SHROOM4Q9ULL8 DEK-201ENST00000244776 1441 ntTSL 2 BASIC30.53■■■□□ 2.48
SHROOM4Q9ULL8 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC30.53■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms