Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX3-1Q99801 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX3-1Q99801 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14.27□□□□□ -0.12
NKX3-1Q99801 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX3-1Q99801 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
NKX3-1Q99801 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NKX3-1Q99801 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.27□□□□□ -0.12
NKX3-1Q99801 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NKX3-1Q99801 PAN3-AS1-201ENST00000563843 1351 ntBASIC14.27□□□□□ -0.12
NKX3-1Q99801 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC14.27□□□□□ -0.12
NKX3-1Q99801 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 AC079781.3-201ENST00000449110 356 ntBASIC14.27□□□□□ -0.13
NKX3-1Q99801 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 AC079776.4-201ENST00000511039 504 ntBASIC14.27□□□□□ -0.13
NKX3-1Q99801 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
NKX3-1Q99801 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.13
NKX3-1Q99801 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC14.27□□□□□ -0.13
NKX3-1Q99801 AC025062.2-201ENST00000605477 670 ntBASIC14.27□□□□□ -0.13
NKX3-1Q99801 AL355877.3-201ENST00000622820 899 ntBASIC14.27□□□□□ -0.13
NKX3-1Q99801 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
NKX3-1Q99801 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.27□□□□□ -0.13
NKX3-1Q99801 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
NKX3-1Q99801 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.27□□□□□ -0.13
NKX3-1Q99801 AL136379.1-201ENST00000623471 2642 ntBASIC14.27□□□□□ -0.13
NKX3-1Q99801 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
NKX3-1Q99801 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX3-1Q99801 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 RBM17P3-201ENST00000417687 1192 ntBASIC14.26□□□□□ -0.13
NKX3-1Q99801 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 SAPCD2P3-201ENST00000455031 850 ntBASIC14.26□□□□□ -0.13
NKX3-1Q99801 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 BMF-207ENST00000559701 630 ntTSL 3 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 ACE-203ENST00000413513 2237 ntTSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
NKX3-1Q99801 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NKX3-1Q99801 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms