Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
IFT140Q96RY7 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
IFT140Q96RY7 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
IFT140Q96RY7 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
IFT140Q96RY7 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
IFT140Q96RY7 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC26.3■■□□□ 1.8
IFT140Q96RY7 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
IFT140Q96RY7 NUP210P1-202ENST00000504322 710 ntBASIC26.3■■□□□ 1.8
IFT140Q96RY7 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
IFT140Q96RY7 CMC2-214ENST00000565925 640 ntTSL 5 BASIC26.3■■□□□ 1.8
IFT140Q96RY7 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC26.3■■□□□ 1.8
IFT140Q96RY7 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
IFT140Q96RY7 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC26.29■■□□□ 1.8
IFT140Q96RY7 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC26.29■■□□□ 1.8
IFT140Q96RY7 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC26.29■■□□□ 1.8
IFT140Q96RY7 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
IFT140Q96RY7 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC26.29■■□□□ 1.8
IFT140Q96RY7 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC26.29■■□□□ 1.8
IFT140Q96RY7 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC26.29■■□□□ 1.8
IFT140Q96RY7 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC26.29■■□□□ 1.8
IFT140Q96RY7 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC26.29■■□□□ 1.8
IFT140Q96RY7 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
IFT140Q96RY7 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC26.29■■□□□ 1.8
IFT140Q96RY7 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
IFT140Q96RY7 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
IFT140Q96RY7 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
IFT140Q96RY7 PHKG1P2-201ENST00000457537 863 ntBASIC26.29■■□□□ 1.8
IFT140Q96RY7 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
IFT140Q96RY7 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
IFT140Q96RY7 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
IFT140Q96RY7 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
IFT140Q96RY7 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
IFT140Q96RY7 TUBBP5-203ENST00000508529 1334 ntBASIC26.28■■□□□ 1.8
IFT140Q96RY7 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
IFT140Q96RY7 AL603756.1-201ENST00000606511 2163 ntBASIC26.28■■□□□ 1.8
IFT140Q96RY7 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
IFT140Q96RY7 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC26.28■■□□□ 1.8
IFT140Q96RY7 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
IFT140Q96RY7 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
IFT140Q96RY7 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
IFT140Q96RY7 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
IFT140Q96RY7 HNRNPA1P63-201ENST00000427917 963 ntBASIC26.28■■□□□ 1.8
IFT140Q96RY7 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC26.28■■□□□ 1.8
IFT140Q96RY7 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
IFT140Q96RY7 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC26.28■■□□□ 1.8
IFT140Q96RY7 AF254983.2-201ENST00000612331 135 ntBASIC26.28■■□□□ 1.8
IFT140Q96RY7 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC26.28■■□□□ 1.8
IFT140Q96RY7 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
IFT140Q96RY7 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
IFT140Q96RY7 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
IFT140Q96RY7 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
IFT140Q96RY7 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
IFT140Q96RY7 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
IFT140Q96RY7 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
IFT140Q96RY7 RNU1-114P-201ENST00000365297 166 ntBASIC26.27■■□□□ 1.8
IFT140Q96RY7 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
IFT140Q96RY7 RAC2-202ENST00000401529 569 ntTSL 4 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 SUN1-204ENST00000403868 978 ntTSL 2 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 AL008707.1-201ENST00000422498 534 ntBASIC26.27■■□□□ 1.8
IFT140Q96RY7 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 MSRA-203ENST00000441698 788 ntTSL 2 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
IFT140Q96RY7 RNF41-210ENST00000552244 716 ntTSL 3 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
IFT140Q96RY7 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
IFT140Q96RY7 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
IFT140Q96RY7 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC26.26■■□□□ 1.8
IFT140Q96RY7 CD276-201ENST00000318424 2738 ntTSL 5 BASIC26.26■■□□□ 1.8
IFT140Q96RY7 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
IFT140Q96RY7 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
IFT140Q96RY7 AC067852.2-201ENST00000590513 2313 ntBASIC26.26■■□□□ 1.79
IFT140Q96RY7 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
IFT140Q96RY7 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
IFT140Q96RY7 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC26.26■■□□□ 1.79
IFT140Q96RY7 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC26.26■■□□□ 1.79
IFT140Q96RY7 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC26.26■■□□□ 1.79
IFT140Q96RY7 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC26.26■■□□□ 1.79
IFT140Q96RY7 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC26.26■■□□□ 1.79
IFT140Q96RY7 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC26.26■■□□□ 1.79
IFT140Q96RY7 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
IFT140Q96RY7 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
IFT140Q96RY7 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
IFT140Q96RY7 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC26.26■■□□□ 1.79
IFT140Q96RY7 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC26.26■■□□□ 1.79
IFT140Q96RY7 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
IFT140Q96RY7 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
IFT140Q96RY7 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
IFT140Q96RY7 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
IFT140Q96RY7 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC26.25■■□□□ 1.79
IFT140Q96RY7 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC26.25■■□□□ 1.79
IFT140Q96RY7 ACTG1P2-201ENST00000415776 1125 ntBASIC26.25■■□□□ 1.79
IFT140Q96RY7 ACTG1P11-201ENST00000425411 1125 ntBASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms