Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 UXT-AS1-201ENST00000590504 1525 ntBASIC12.59□□□□□ -0.39
CCDC140Q96MF4 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 AC022188.1-201ENST00000620960 1664 ntBASIC12.59□□□□□ -0.39
CCDC140Q96MF4 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 RPP21-221ENST00000428040 594 ntTSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 SSH2-211ENST00000590153 570 ntTSL 4 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC12.59□□□□□ -0.39
CCDC140Q96MF4 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
CCDC140Q96MF4 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
CCDC140Q96MF4 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC12.58□□□□□ -0.39
CCDC140Q96MF4 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.39
CCDC140Q96MF4 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC12.58□□□□□ -0.39
CCDC140Q96MF4 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 HAUS4P1-201ENST00000406739 1145 ntBASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AC004461.1-201ENST00000412461 403 ntBASIC12.58□□□□□ -0.4
CCDC140Q96MF4 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AP000344.2-201ENST00000512987 629 ntBASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AC008677.1-201ENST00000519230 1561 ntBASIC12.58□□□□□ -0.4
CCDC140Q96MF4 DHDH-204ENST00000523250 634 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 CCND1-203ENST00000536559 553 ntTSL 3 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 SLC25A39P2-201ENST00000537614 270 ntBASIC12.58□□□□□ -0.4
CCDC140Q96MF4 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AC061975.2-201ENST00000581722 295 ntBASIC12.58□□□□□ -0.4
CCDC140Q96MF4 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AGK-211ENST00000629555 2765 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AC084121.4-201ENST00000641598 221 ntBASIC12.58□□□□□ -0.4
CCDC140Q96MF4 AF228730.8-201ENST00000642140 221 ntBASIC12.58□□□□□ -0.4
CCDC140Q96MF4 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC12.58□□□□□ -0.4
CCDC140Q96MF4 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms