Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
LRCH3Q96II8 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
LRCH3Q96II8 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
LRCH3Q96II8 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
LRCH3Q96II8 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
LRCH3Q96II8 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 HTR7P1-202ENST00000624664 4411 ntBASIC17.51■□□□□ 0.39
LRCH3Q96II8 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 MPV17-204ENST00000399052 749 ntTSL 4 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 AC007969.1-201ENST00000433675 447 ntBASIC17.51■□□□□ 0.39
LRCH3Q96II8 BX284668.4-201ENST00000453917 508 ntBASIC17.51■□□□□ 0.39
LRCH3Q96II8 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 AC141586.5-201ENST00000624546 2050 ntBASIC17.51■□□□□ 0.39
LRCH3Q96II8 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.51■□□□□ 0.39
LRCH3Q96II8 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LRCH3Q96II8 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 TSACC-208ENST00000481479 741 ntTSL 2 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 AP003419.4-201ENST00000616071 517 ntBASIC17.5■□□□□ 0.39
LRCH3Q96II8 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 AC138627.1-207ENST00000641560 1006 ntBASIC17.5■□□□□ 0.39
LRCH3Q96II8 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.5■□□□□ 0.39
LRCH3Q96II8 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LRCH3Q96II8 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LRCH3Q96II8 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.49■□□□□ 0.39
LRCH3Q96II8 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.49■□□□□ 0.39
LRCH3Q96II8 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
LRCH3Q96II8 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LRCH3Q96II8 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms