Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 RBPMS2P1-201ENST00000437762 623 ntBASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 SLC25A39P2-201ENST00000537614 270 ntBASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 AC027307.2-201ENST00000591252 911 ntBASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CHMP4CQ96CF2 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 CYMP-203ENST00000474680 1263 ntBASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHMP4CQ96CF2 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 LINC01225-203ENST00000563550 1244 ntBASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 Z92544.3-201ENST00000624747 417 ntBASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 MST1L-201ENST00000442552 2185 ntBASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 AC005052.1-201ENST00000625181 2492 ntBASIC19.41■□□□□ 0.7
CHMP4CQ96CF2 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CHMP4CQ96CF2 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms