Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 AC006058.4-201ENST00000624016 1670 ntBASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 AL022342.1-201ENST00000400363 863 ntBASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 AC120114.3-201ENST00000611923 658 ntBASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 BX640515.1-201ENST00000617215 977 ntBASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
DEPDC4Q8N2C3 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 POU5F1P6-201ENST00000466990 990 ntBASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 OR7E14P-202ENST00000530490 1290 ntBASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 RN7SL121P-201ENST00000584223 273 ntBASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 AC006538.3-201ENST00000612495 578 ntBASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 Z99916.3-201ENST00000623422 1080 ntBASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 AP000867.4-201ENST00000641616 219 ntBASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms