Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.14■□□□□ 0.01
BEST3Q8N1M1 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 AC005915.1-201ENST00000624912 2018 ntBASIC15.14■□□□□ 0.01
BEST3Q8N1M1 AL603756.1-201ENST00000606511 2163 ntBASIC15.14■□□□□ 0.01
BEST3Q8N1M1 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.14■□□□□ 0.01
BEST3Q8N1M1 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 AC105020.1-201ENST00000435356 2205 ntBASIC15.13■□□□□ 0.01
BEST3Q8N1M1 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 PCDHA14-201ENST00000506751 2298 ntBASIC15.13■□□□□ 0.01
BEST3Q8N1M1 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 FAM220BP-201ENST00000377689 816 ntBASIC15.13■□□□□ 0.01
BEST3Q8N1M1 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 AL512638.1-201ENST00000457493 794 ntBASIC15.13■□□□□ 0.01
BEST3Q8N1M1 AC098859.1-201ENST00000502915 1238 ntBASIC15.13■□□□□ 0.01
BEST3Q8N1M1 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 RNA5SP410-201ENST00000516285 106 ntBASIC15.13■□□□□ 0.01
BEST3Q8N1M1 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 AC007967.4-201ENST00000614700 386 ntBASIC15.13■□□□□ 0.01
BEST3Q8N1M1 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.13■□□□□ 0.01
BEST3Q8N1M1 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BEST3Q8N1M1 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 AC063926.3-201ENST00000624734 5658 ntBASIC15.12■□□□□ 0.01
BEST3Q8N1M1 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 AL031731.1-201ENST00000642131 2094 ntBASIC15.12■□□□□ 0.01
BEST3Q8N1M1 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 AL353705.2-201ENST00000428243 662 ntBASIC15.12■□□□□ 0.01
BEST3Q8N1M1 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.12■□□□□ 0.01
BEST3Q8N1M1 AC020765.3-201ENST00000613051 740 ntBASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms