Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 PRYP6-201ENST00000514804 343 ntBASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 PGAM5P1-201ENST00000518923 814 ntBASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 AC112191.1-201ENST00000523689 701 ntBASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 AC002347.1-201ENST00000569543 541 ntBASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 AC091812.2-201ENST00000619081 385 ntBASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 AL162727.3-201ENST00000635661 2787 ntBASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ZNF549Q6P9A3 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 PKD1P5-201ENST00000532415 10291 ntBASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 AL671883.3-201ENST00000603274 991 ntBASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 AC092902.6-201ENST00000641783 218 ntBASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 AC105917.1-201ENST00000506637 2539 ntBASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ZNF549Q6P9A3 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.14■□□□□ 0.18
ZNF549Q6P9A3 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
ZNF549Q6P9A3 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
ZNF549Q6P9A3 FOXO1B-201ENST00000504678 1527 ntBASIC16.14■□□□□ 0.18
ZNF549Q6P9A3 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.14■□□□□ 0.18
ZNF549Q6P9A3 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 AL022342.1-201ENST00000400363 863 ntBASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 POLD2P1-201ENST00000511220 997 ntBASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 RARRES2P8-201ENST00000566335 367 ntBASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
ZNF549Q6P9A3 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms