Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PPP4R4Q6NUP7 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 AC112504.1-201ENST00000623415 1841 ntBASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 AC003669.1-201ENST00000334569 611 ntBASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 AL020989.1-201ENST00000422979 469 ntBASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 KRT18P67-201ENST00000432816 1264 ntBASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 RPS2P1-201ENST00000434010 821 ntBASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 AC093909.1-201ENST00000504731 1122 ntBASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 RNPS1P1-201ENST00000507437 918 ntBASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 AL662844.1-201ENST00000546340 181 ntBASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PPP4R4Q6NUP7 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 AC023157.3-201ENST00000619086 2088 ntBASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 PMPCAP1-201ENST00000508114 1576 ntBASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PPP4R4Q6NUP7 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms