Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 WASH4P-201ENST00000564273 1246 ntBASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 AC008494.3-201ENST00000606615 944 ntBASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
RNFT1Q5M7Z0 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.58□□□□□ -0.07
RNFT1Q5M7Z0 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
RNFT1Q5M7Z0 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.58□□□□□ -0.07
RNFT1Q5M7Z0 FLJ38576-201ENST00000623820 2459 ntBASIC14.58□□□□□ -0.07
RNFT1Q5M7Z0 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
RNFT1Q5M7Z0 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
RNFT1Q5M7Z0 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
RNFT1Q5M7Z0 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 AC138969.3-201ENST00000546612 1459 ntBASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 AC138932.2-201ENST00000548268 1459 ntBASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 AC126755.4-201ENST00000549796 1459 ntBASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 AC093004.1-201ENST00000508850 424 ntBASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 AC023310.3-201ENST00000557027 670 ntBASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 AC100756.1-201ENST00000562736 682 ntBASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 AC138749.3-201ENST00000567691 622 ntBASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 AC116165.1-201ENST00000611806 668 ntBASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 SLC7A15P-201ENST00000424028 1363 ntBASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RNFT1Q5M7Z0 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 ALOX12P2-203ENST00000570921 1945 ntBASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 POU5F1P6-201ENST00000466990 990 ntBASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
RNFT1Q5M7Z0 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms