Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CLRN1P58418 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLRN1P58418 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLRN1P58418 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CLRN1P58418 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
CLRN1P58418 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.58□□□□□ -0.07
CLRN1P58418 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.58□□□□□ -0.07
CLRN1P58418 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.58□□□□□ -0.07
CLRN1P58418 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
CLRN1P58418 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
CLRN1P58418 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CLRN1P58418 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 AL592424.1-201ENST00000563624 1536 ntBASIC14.58□□□□□ -0.08
CLRN1P58418 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.58□□□□□ -0.08
CLRN1P58418 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
CLRN1P58418 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 AC023274.1-201ENST00000418278 595 ntBASIC14.58□□□□□ -0.08
CLRN1P58418 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.58□□□□□ -0.08
CLRN1P58418 AC040169.1-201ENST00000565382 521 ntBASIC14.58□□□□□ -0.08
CLRN1P58418 AP002472.1-201ENST00000577490 586 ntBASIC14.58□□□□□ -0.08
CLRN1P58418 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC14.58□□□□□ -0.08
CLRN1P58418 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CLRN1P58418 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CLRN1P58418 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.58□□□□□ -0.08
CLRN1P58418 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CLRN1P58418 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC14.58□□□□□ -0.08
CLRN1P58418 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.58□□□□□ -0.08
CLRN1P58418 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.57□□□□□ -0.08
CLRN1P58418 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
CLRN1P58418 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CLRN1P58418 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CLRN1P58418 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.57□□□□□ -0.08
CLRN1P58418 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.57□□□□□ -0.08
CLRN1P58418 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC14.57□□□□□ -0.08
CLRN1P58418 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
CLRN1P58418 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.57□□□□□ -0.08
CLRN1P58418 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CLRN1P58418 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
CLRN1P58418 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
CLRN1P58418 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.57□□□□□ -0.08
CLRN1P58418 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CLRN1P58418 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC14.57□□□□□ -0.08
CLRN1P58418 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.57□□□□□ -0.08
CLRN1P58418 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CLRN1P58418 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CLRN1P58418 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.57□□□□□ -0.08
CLRN1P58418 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.57□□□□□ -0.08
CLRN1P58418 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.57□□□□□ -0.08
CLRN1P58418 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
CLRN1P58418 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
CLRN1P58418 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
CLRN1P58418 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
CLRN1P58418 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN1P58418 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
CLRN1P58418 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.56□□□□□ -0.08
CLRN1P58418 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN1P58418 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.56□□□□□ -0.08
CLRN1P58418 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
CLRN1P58418 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms