Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MIR7845-201ENST00000618396 99 ntBASIC19.34■□□□□ 0.69
BRCA1P38398 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC19.34■□□□□ 0.69
BRCA1P38398 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
BRCA1P38398 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
BRCA1P38398 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
BRCA1P38398 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
BRCA1P38398 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
BRCA1P38398 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC19.33■□□□□ 0.69
BRCA1P38398 PARVG-202ENST00000415224 999 ntTSL 2 BASIC19.33■□□□□ 0.69
BRCA1P38398 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC19.33■□□□□ 0.69
BRCA1P38398 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
BRCA1P38398 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC19.33■□□□□ 0.69
BRCA1P38398 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC19.33■□□□□ 0.69
BRCA1P38398 MAGEA5-201ENST00000446757 942 ntBASIC19.33■□□□□ 0.69
BRCA1P38398 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.33■□□□□ 0.69
BRCA1P38398 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC19.33■□□□□ 0.69
BRCA1P38398 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC19.33■□□□□ 0.69
BRCA1P38398 AC097359.3-201ENST00000603982 1210 ntBASIC19.33■□□□□ 0.69
BRCA1P38398 AL645939.5-201ENST00000606834 243 ntBASIC19.33■□□□□ 0.69
BRCA1P38398 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
BRCA1P38398 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
BRCA1P38398 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC19.33■□□□□ 0.68
BRCA1P38398 ZBTB45P2-201ENST00000452245 1531 ntBASIC19.33■□□□□ 0.68
BRCA1P38398 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
BRCA1P38398 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC19.33■□□□□ 0.68
BRCA1P38398 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC19.33■□□□□ 0.68
BRCA1P38398 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
BRCA1P38398 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.33■□□□□ 0.68
BRCA1P38398 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
BRCA1P38398 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC19.33■□□□□ 0.68
BRCA1P38398 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
BRCA1P38398 AL354877.1-201ENST00000424412 413 ntBASIC19.33■□□□□ 0.68
BRCA1P38398 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
BRCA1P38398 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
BRCA1P38398 AC091544.8-201ENST00000619490 361 ntBASIC19.33■□□□□ 0.68
BRCA1P38398 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRCA1P38398 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC19.32■□□□□ 0.68
BRCA1P38398 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRCA1P38398 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.32■□□□□ 0.68
BRCA1P38398 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRCA1P38398 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRCA1P38398 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
BRCA1P38398 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC19.32■□□□□ 0.68
BRCA1P38398 PTPA-218ENST00000435132 618 ntTSL 2 BASIC19.32■□□□□ 0.68
BRCA1P38398 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
BRCA1P38398 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
BRCA1P38398 RN7SL555P-201ENST00000584742 339 ntBASIC19.32■□□□□ 0.68
BRCA1P38398 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC19.32■□□□□ 0.68
BRCA1P38398 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
BRCA1P38398 AL133499.1-201ENST00000596207 608 ntBASIC19.32■□□□□ 0.68
BRCA1P38398 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC19.32■□□□□ 0.68
BRCA1P38398 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
BRCA1P38398 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRCA1P38398 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.32■□□□□ 0.68
BRCA1P38398 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.32■□□□□ 0.68
BRCA1P38398 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRCA1P38398 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.32■□□□□ 0.68
BRCA1P38398 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
BRCA1P38398 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRCA1P38398 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRCA1P38398 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.31■□□□□ 0.68
BRCA1P38398 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
BRCA1P38398 AL627389.1-201ENST00000413508 1182 ntBASIC19.31■□□□□ 0.68
BRCA1P38398 PHKG1P2-201ENST00000457537 863 ntBASIC19.31■□□□□ 0.68
BRCA1P38398 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC19.31■□□□□ 0.68
BRCA1P38398 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
BRCA1P38398 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
BRCA1P38398 IQSEC3P1-201ENST00000538799 536 ntBASIC19.31■□□□□ 0.68
BRCA1P38398 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC19.31■□□□□ 0.68
BRCA1P38398 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
BRCA1P38398 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC19.31■□□□□ 0.68
BRCA1P38398 AC073413.1-201ENST00000603927 732 ntBASIC19.31■□□□□ 0.68
BRCA1P38398 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC19.31■□□□□ 0.68
BRCA1P38398 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC19.31■□□□□ 0.68
BRCA1P38398 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRCA1P38398 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRCA1P38398 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRCA1P38398 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRCA1P38398 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC19.31■□□□□ 0.68
BRCA1P38398 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC19.31■□□□□ 0.68
BRCA1P38398 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRCA1P38398 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRCA1P38398 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.31■□□□□ 0.68
BRCA1P38398 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
BRCA1P38398 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
BRCA1P38398 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
BRCA1P38398 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.31■□□□□ 0.68
BRCA1P38398 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
BRCA1P38398 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
BRCA1P38398 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
BRCA1P38398 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC19.31■□□□□ 0.68
BRCA1P38398 AC060834.1-201ENST00000443027 2032 ntBASIC19.31■□□□□ 0.68
BRCA1P38398 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC19.31■□□□□ 0.68
BRCA1P38398 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms