Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RORAP35398 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RORAP35398 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RORAP35398 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
RORAP35398 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RORAP35398 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RORAP35398 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
RORAP35398 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RORAP35398 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC15.47■□□□□ 0.07
RORAP35398 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
RORAP35398 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15.47■□□□□ 0.07
RORAP35398 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.47■□□□□ 0.07
RORAP35398 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.47■□□□□ 0.07
RORAP35398 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC15.47■□□□□ 0.07
RORAP35398 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.47■□□□□ 0.07
RORAP35398 AC105021.1-202ENST00000570572 669 ntBASIC15.47■□□□□ 0.07
RORAP35398 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.47■□□□□ 0.07
RORAP35398 LINC02560-201ENST00000596379 459 ntBASIC15.47■□□□□ 0.07
RORAP35398 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.47■□□□□ 0.07
RORAP35398 RN7SL828P-201ENST00000607615 303 ntBASIC15.47■□□□□ 0.07
RORAP35398 AC008761.3-201ENST00000624803 892 ntBASIC15.47■□□□□ 0.07
RORAP35398 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
RORAP35398 AGGF1P2-201ENST00000426656 2106 ntBASIC15.47■□□□□ 0.07
RORAP35398 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RORAP35398 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
RORAP35398 AL589702.1-201ENST00000641229 1509 ntBASIC15.47■□□□□ 0.07
RORAP35398 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.47■□□□□ 0.07
RORAP35398 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
RORAP35398 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
RORAP35398 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.47■□□□□ 0.07
RORAP35398 FLJ38576-201ENST00000623820 2459 ntBASIC15.46■□□□□ 0.07
RORAP35398 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
RORAP35398 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
RORAP35398 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
RORAP35398 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
RORAP35398 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RORAP35398 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC15.46■□□□□ 0.07
RORAP35398 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.46■□□□□ 0.07
RORAP35398 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.46■□□□□ 0.07
RORAP35398 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.46■□□□□ 0.07
RORAP35398 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RORAP35398 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RORAP35398 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
RORAP35398 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
RORAP35398 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
RORAP35398 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.46■□□□□ 0.07
RORAP35398 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
RORAP35398 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.46■□□□□ 0.07
RORAP35398 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.46■□□□□ 0.07
RORAP35398 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.46■□□□□ 0.07
RORAP35398 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RORAP35398 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RORAP35398 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.46■□□□□ 0.07
RORAP35398 AL133215.2-201ENST00000609242 977 ntBASIC15.46■□□□□ 0.07
RORAP35398 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
RORAP35398 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
RORAP35398 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.46■□□□□ 0.07
RORAP35398 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RORAP35398 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RORAP35398 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
RORAP35398 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.46■□□□□ 0.06
RORAP35398 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.46■□□□□ 0.06
RORAP35398 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
RORAP35398 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
RORAP35398 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.45■□□□□ 0.06
RORAP35398 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
RORAP35398 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.45■□□□□ 0.06
RORAP35398 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.45■□□□□ 0.06
RORAP35398 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.45■□□□□ 0.06
RORAP35398 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.45■□□□□ 0.06
RORAP35398 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.45■□□□□ 0.06
RORAP35398 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.45■□□□□ 0.06
RORAP35398 TEX28P1-201ENST00000613479 1221 ntBASIC15.45■□□□□ 0.06
RORAP35398 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.45■□□□□ 0.06
RORAP35398 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.45■□□□□ 0.06
RORAP35398 TEX28P2-201ENST00000617764 1221 ntBASIC15.45■□□□□ 0.06
RORAP35398 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.45■□□□□ 0.06
RORAP35398 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RORAP35398 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms