Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.11■□□□□ 0.33
BDNFP23560 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
BDNFP23560 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
BDNFP23560 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.11■□□□□ 0.33
BDNFP23560 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
BDNFP23560 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
BDNFP23560 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.11■□□□□ 0.33
BDNFP23560 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.11■□□□□ 0.33
BDNFP23560 AL139010.1-201ENST00000454878 894 ntBASIC17.11■□□□□ 0.33
BDNFP23560 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.11■□□□□ 0.33
BDNFP23560 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.11■□□□□ 0.33
BDNFP23560 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.11■□□□□ 0.33
BDNFP23560 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.11■□□□□ 0.33
BDNFP23560 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.11■□□□□ 0.33
BDNFP23560 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
BDNFP23560 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.11■□□□□ 0.33
BDNFP23560 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.11■□□□□ 0.33
BDNFP23560 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
BDNFP23560 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.11■□□□□ 0.33
BDNFP23560 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.11■□□□□ 0.33
BDNFP23560 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
BDNFP23560 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
BDNFP23560 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
BDNFP23560 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
BDNFP23560 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
BDNFP23560 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
BDNFP23560 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.1■□□□□ 0.33
BDNFP23560 AL080243.2-201ENST00000418783 582 ntBASIC17.1■□□□□ 0.33
BDNFP23560 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.1■□□□□ 0.33
BDNFP23560 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.1■□□□□ 0.33
BDNFP23560 TSPY16P-201ENST00000449843 468 ntBASIC17.1■□□□□ 0.33
BDNFP23560 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.1■□□□□ 0.33
BDNFP23560 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.1■□□□□ 0.33
BDNFP23560 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.1■□□□□ 0.33
BDNFP23560 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
BDNFP23560 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
BDNFP23560 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
BDNFP23560 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 AL136982.4-201ENST00000437689 1740 ntBASIC17.1■□□□□ 0.33
BDNFP23560 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
BDNFP23560 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.1■□□□□ 0.33
BDNFP23560 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
BDNFP23560 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
BDNFP23560 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.09■□□□□ 0.33
BDNFP23560 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
BDNFP23560 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BDNFP23560 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BDNFP23560 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
BDNFP23560 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.09■□□□□ 0.33
BDNFP23560 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BDNFP23560 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BDNFP23560 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BDNFP23560 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
BDNFP23560 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
BDNFP23560 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.09■□□□□ 0.33
BDNFP23560 MRPS18AP1-201ENST00000414458 589 ntBASIC17.09■□□□□ 0.33
BDNFP23560 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.09■□□□□ 0.33
BDNFP23560 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.09■□□□□ 0.33
BDNFP23560 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.09■□□□□ 0.33
BDNFP23560 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.09■□□□□ 0.33
BDNFP23560 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.09■□□□□ 0.33
BDNFP23560 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
BDNFP23560 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.09■□□□□ 0.33
BDNFP23560 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.09■□□□□ 0.33
BDNFP23560 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BDNFP23560 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.09■□□□□ 0.33
BDNFP23560 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.09■□□□□ 0.33
BDNFP23560 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.09■□□□□ 0.33
BDNFP23560 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.09■□□□□ 0.33
BDNFP23560 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC17.09■□□□□ 0.33
BDNFP23560 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
BDNFP23560 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms