Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
USF1P22415 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
USF1P22415 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC13.82□□□□□ -0.2
USF1P22415 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
USF1P22415 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
USF1P22415 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC13.82□□□□□ -0.2
USF1P22415 GK-202ENST00000378941 458 ntTSL 3 BASIC13.82□□□□□ -0.2
USF1P22415 HNRNPA3P1-201ENST00000401429 1139 ntBASIC13.82□□□□□ -0.2
USF1P22415 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 PIN1P1-201ENST00000412108 996 ntBASIC13.82□□□□□ -0.2
USF1P22415 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC13.82□□□□□ -0.2
USF1P22415 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.82□□□□□ -0.2
USF1P22415 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.82□□□□□ -0.2
USF1P22415 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC13.82□□□□□ -0.2
USF1P22415 HNRNPA3P5-201ENST00000455201 833 ntBASIC13.82□□□□□ -0.2
USF1P22415 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC13.82□□□□□ -0.2
USF1P22415 MIR4492-201ENST00000581627 80 ntBASIC13.82□□□□□ -0.2
USF1P22415 AC073389.1-201ENST00000595595 795 ntBASIC13.82□□□□□ -0.2
USF1P22415 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC13.82□□□□□ -0.2
USF1P22415 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC13.82□□□□□ -0.2
USF1P22415 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
USF1P22415 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
USF1P22415 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
USF1P22415 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC13.82□□□□□ -0.2
USF1P22415 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
USF1P22415 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC13.81□□□□□ -0.2
USF1P22415 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
USF1P22415 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
USF1P22415 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
USF1P22415 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC13.81□□□□□ -0.2
USF1P22415 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
USF1P22415 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC13.81□□□□□ -0.2
USF1P22415 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 HLA-H-201ENST00000383620 1096 ntBASIC13.81□□□□□ -0.2
USF1P22415 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.81□□□□□ -0.2
USF1P22415 AL353705.2-201ENST00000428243 662 ntBASIC13.81□□□□□ -0.2
USF1P22415 WDR53-204ENST00000433160 887 ntTSL 5 BASIC13.81□□□□□ -0.2
USF1P22415 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC13.81□□□□□ -0.2
USF1P22415 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC13.81□□□□□ -0.2
USF1P22415 SERBP1P5-201ENST00000510079 1181 ntBASIC13.81□□□□□ -0.2
USF1P22415 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC13.81□□□□□ -0.2
USF1P22415 PRYP6-201ENST00000514804 343 ntBASIC13.81□□□□□ -0.2
USF1P22415 LY6E-204ENST00000519546 971 ntTSL 2 BASIC13.81□□□□□ -0.2
USF1P22415 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
USF1P22415 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC13.81□□□□□ -0.2
USF1P22415 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC13.81□□□□□ -0.2
USF1P22415 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC13.81□□□□□ -0.2
USF1P22415 AC004233.3-201ENST00000607794 1269 ntBASIC13.81□□□□□ -0.2
USF1P22415 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC13.81□□□□□ -0.2
USF1P22415 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC13.81□□□□□ -0.2
USF1P22415 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.81□□□□□ -0.2
USF1P22415 LINC00895-201ENST00000629028 1637 ntBASIC13.81□□□□□ -0.2
USF1P22415 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.81□□□□□ -0.2
USF1P22415 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 CICP6-201ENST00000457191 2729 ntBASIC13.81□□□□□ -0.2
USF1P22415 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 AL035456.1-201ENST00000456064 1369 ntBASIC13.81□□□□□ -0.2
USF1P22415 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
USF1P22415 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms