Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 AC018892.3-201ENST00000623986 2499 ntBASIC18.78■□□□□ 0.6
CTDNEP1O95476 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 FAM58DP-201ENST00000428076 619 ntBASIC18.78■□□□□ 0.6
CTDNEP1O95476 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 AL592309.1-201ENST00000443127 649 ntBASIC18.78■□□□□ 0.6
CTDNEP1O95476 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 CEND1P1-201ENST00000451006 455 ntBASIC18.78■□□□□ 0.6
CTDNEP1O95476 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 KRT8P23-201ENST00000560090 1207 ntBASIC18.78■□□□□ 0.6
CTDNEP1O95476 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 MIR4469-201ENST00000583919 79 ntBASIC18.78■□□□□ 0.6
CTDNEP1O95476 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 AL513210.1-201ENST00000629608 234 ntBASIC18.78■□□□□ 0.6
CTDNEP1O95476 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 AC092384.3-202ENST00000564646 2873 ntBASIC18.78■□□□□ 0.6
CTDNEP1O95476 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.78■□□□□ 0.6
CTDNEP1O95476 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 AP001282.1-201ENST00000531301 1499 ntBASIC18.77■□□□□ 0.6
CTDNEP1O95476 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.77■□□□□ 0.6
CTDNEP1O95476 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.77■□□□□ 0.6
CTDNEP1O95476 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 BNIP3P1-202ENST00000550043 1585 ntBASIC18.77■□□□□ 0.6
CTDNEP1O95476 AP3S2-216ENST00000617003 1561 ntBASIC18.77■□□□□ 0.6
CTDNEP1O95476 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CTDNEP1O95476 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CTDNEP1O95476 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.77■□□□□ 0.6
CTDNEP1O95476 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 RPSAP43-201ENST00000402237 625 ntBASIC18.77■□□□□ 0.6
CTDNEP1O95476 PP14571-201ENST00000404327 934 ntTSL 2 BASIC18.77■□□□□ 0.6
CTDNEP1O95476 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.77■□□□□ 0.6
CTDNEP1O95476 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.77■□□□□ 0.6
CTDNEP1O95476 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
CTDNEP1O95476 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
CTDNEP1O95476 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CTDNEP1O95476 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
CTDNEP1O95476 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CTDNEP1O95476 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
CTDNEP1O95476 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CTDNEP1O95476 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CTDNEP1O95476 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CTDNEP1O95476 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CTDNEP1O95476 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
CTDNEP1O95476 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
CTDNEP1O95476 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CTDNEP1O95476 LINC00554-201ENST00000564841 3011 ntBASIC18.76■□□□□ 0.59
CTDNEP1O95476 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.76■□□□□ 0.59
CTDNEP1O95476 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.76■□□□□ 0.59
CTDNEP1O95476 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CTDNEP1O95476 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CTDNEP1O95476 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.76■□□□□ 0.59
CTDNEP1O95476 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.76■□□□□ 0.59
CTDNEP1O95476 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC18.76■□□□□ 0.59
CTDNEP1O95476 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CTDNEP1O95476 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CTDNEP1O95476 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CTDNEP1O95476 AC004461.1-201ENST00000412461 403 ntBASIC18.76■□□□□ 0.59
CTDNEP1O95476 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.76■□□□□ 0.59
CTDNEP1O95476 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
CTDNEP1O95476 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.76■□□□□ 0.59
CTDNEP1O95476 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.76■□□□□ 0.59
CTDNEP1O95476 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.76■□□□□ 0.59
CTDNEP1O95476 AC010327.4-202ENST00000591484 748 ntBASIC18.76■□□□□ 0.59
CTDNEP1O95476 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms