Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 HYMAI-201ENST00000635591 3347 ntBASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 ME2P1-201ENST00000426028 1970 ntBASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 AP3S2-216ENST00000617003 1561 ntBASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 FAM220BP-201ENST00000377689 816 ntBASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.19■□□□□ 0.18
TRIM39Q9HCM9 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 U82695.1-201ENST00000635752 1889 ntBASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 ALOX12P2-203ENST00000570921 1945 ntBASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 HLA-H-201ENST00000383620 1096 ntBASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 AL645939.2-201ENST00000427340 991 ntBASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 SPDYE14P-201ENST00000442619 822 ntBASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 AC069262.1-201ENST00000539058 672 ntBASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 RARRES2P9-201ENST00000565168 469 ntBASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRIM39Q9HCM9 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 SPDYE7P-202ENST00000420373 878 ntBASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.17■□□□□ 0.18
TRIM39Q9HCM9 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms