Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 AC105021.1-202ENST00000570572 669 ntBASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAIPQ9BWF2 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
TRAIPQ9BWF2 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.83■□□□□ 0.45
TRAIPQ9BWF2 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TRAIPQ9BWF2 AL589702.1-201ENST00000641229 1509 ntBASIC17.83■□□□□ 0.45
TRAIPQ9BWF2 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.83■□□□□ 0.45
TRAIPQ9BWF2 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TRAIPQ9BWF2 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.45
TRAIPQ9BWF2 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TRAIPQ9BWF2 AL031731.1-201ENST00000642131 2094 ntBASIC17.83■□□□□ 0.45
TRAIPQ9BWF2 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC17.83■□□□□ 0.45
TRAIPQ9BWF2 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 AC009118.2-201ENST00000613275 655 ntBASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 TEX28P1-201ENST00000613479 1221 ntBASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 TEX28P2-201ENST00000617764 1221 ntBASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 AF228730.6-201ENST00000641497 218 ntBASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 AC084121.3-201ENST00000641716 218 ntBASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 AC105233.6-201ENST00000642093 218 ntBASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 CETN4P-206ENST00000642099 2168 ntBASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 AC006538.1-201ENST00000567905 1585 ntBASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAIPQ9BWF2 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 GGT4P-201ENST00000623672 1708 ntBASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 AC015922.1-201ENST00000421102 1152 ntBASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 RNA5SP410-201ENST00000516285 106 ntBASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 ZNF890P-202ENST00000530367 1156 ntBASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 AC024267.1-201ENST00000582320 895 ntBASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAIPQ9BWF2 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAIPQ9BWF2 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms