Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 AP001350.2-201ENST00000625104 1094 ntBASIC15.68■□□□□ 0.1
VMP1Q96GC9 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
VMP1Q96GC9 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
VMP1Q96GC9 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 MKNK2P1-201ENST00000437526 628 ntBASIC15.67■□□□□ 0.1
VMP1Q96GC9 AC087641.1-201ENST00000557561 1021 ntBASIC15.67■□□□□ 0.1
VMP1Q96GC9 MPDU1-223ENST00000582151 728 ntBASIC15.67■□□□□ 0.1
VMP1Q96GC9 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 GPALPP1-207ENST00000611650 899 ntBASIC15.67■□□□□ 0.1
VMP1Q96GC9 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 MBP-202ENST00000355994 2772 ntTSL 5 BASIC15.67■□□□□ 0.1
VMP1Q96GC9 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
VMP1Q96GC9 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 AC112482.1-201ENST00000492080 688 ntBASIC15.66■□□□□ 0.1
VMP1Q96GC9 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
VMP1Q96GC9 AC005829.1-201ENST00000570002 483 ntBASIC15.66■□□□□ 0.1
VMP1Q96GC9 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.66■□□□□ 0.1
VMP1Q96GC9 AC006538.3-201ENST00000612495 578 ntBASIC15.66■□□□□ 0.1
VMP1Q96GC9 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms