Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 AC016027.1-202ENST00000607927 1699 ntBASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 AL031284.1-201ENST00000419297 478 ntBASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 VN2R19P-201ENST00000442399 1052 ntBASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 AC009947.1-201ENST00000444350 727 ntBASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 AL773604.1-201ENST00000617417 272 ntBASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 AC008677.1-201ENST00000519230 1561 ntBASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 NID2-208ENST00000617139 3827 ntTSL 5 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ATG4AQ8WYN0 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 PMS2P4-201ENST00000412466 1052 ntBASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 UNC93B6-202ENST00000528242 690 ntBASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 AP002469.2-201ENST00000531724 424 ntBASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 MIR3909-201ENST00000579518 119 ntBASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 AL645728.2-201ENST00000641974 660 ntBASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ATG4AQ8WYN0 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 AC023824.1-201ENST00000562945 2975 ntBASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 AC104692.2-201ENST00000603054 253 ntBASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 AC116407.3-201ENST00000623905 1129 ntBASIC16.9■□□□□ 0.3
ATG4AQ8WYN0 AC010507.1-201ENST00000633895 436 ntBASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms