Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 MRPL3P1-201ENST00000400109 1033 ntBASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 IGLL3P-201ENST00000412472 434 ntBASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 AL160237.2-201ENST00000556165 472 ntBASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 AC116407.3-201ENST00000623905 1129 ntBASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.7■□□□□ 0.1
CLHC1Q8NHS4 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 AL450487.1-201ENST00000426799 995 ntBASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 UNC93B6-202ENST00000528242 690 ntBASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 AC104692.2-201ENST00000603054 253 ntBASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CLHC1Q8NHS4 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 AC112504.1-201ENST00000623415 1841 ntBASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 MST1L-201ENST00000442552 2185 ntBASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
CLHC1Q8NHS4 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms