Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 RCN1P2-201ENST00000398357 915 ntBASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 AC105339.3-201ENST00000560043 636 ntBASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 GZMM-202ENST00000592501 941 ntTSL 3 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 AC013467.2-201ENST00000605472 835 ntBASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 AC093512.1-201ENST00000617969 520 ntBASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC13.62□□□□□ -0.23
PDLIM3Q53GG5 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 INTS4P1-201ENST00000438455 1935 ntBASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 MYO15B-237ENST00000642007 4893 ntBASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 EDF1-203ENST00000371649 790 ntTSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 SIGLEC30P-201ENST00000455569 941 ntBASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 AC005225.4-201ENST00000557330 545 ntBASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.61□□□□□ -0.23
PDLIM3Q53GG5 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms