Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 DEK-201ENST00000244776 1441 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC88AQ3V6T2 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 HNRNPA1P13-201ENST00000510646 963 ntBASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 AP000812.2-201ENST00000538934 718 ntBASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 AC105129.2-201ENST00000559536 390 ntBASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 COG4-212ENST00000564653 590 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC19.62■□□□□ 0.73
CCDC88AQ3V6T2 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 AC106872.11-201ENST00000605838 421 ntBASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CCDC88AQ3V6T2 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 YBX1P6-201ENST00000442962 1002 ntBASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 NME4-207ENST00000450036 985 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 MSTO2P-201ENST00000314835 1709 ntBASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 HINT2P1-201ENST00000419438 481 ntBASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 KRT8P37-201ENST00000451609 1420 ntBASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC88AQ3V6T2 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC88AQ3V6T2 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms