Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.91■□□□□ 0.3
PTPN9P43378 AC004967.1-201ENST00000453589 447 ntBASIC16.91■□□□□ 0.3
PTPN9P43378 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
PTPN9P43378 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.91■□□□□ 0.3
PTPN9P43378 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.91■□□□□ 0.3
PTPN9P43378 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.91■□□□□ 0.3
PTPN9P43378 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 RARRES2P9-201ENST00000565168 469 ntBASIC16.91■□□□□ 0.3
PTPN9P43378 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.91■□□□□ 0.3
PTPN9P43378 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.91■□□□□ 0.3
PTPN9P43378 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.91■□□□□ 0.3
PTPN9P43378 AC009093.7-201ENST00000623853 1223 ntBASIC16.91■□□□□ 0.3
PTPN9P43378 AC134684.3-201ENST00000641758 218 ntBASIC16.91■□□□□ 0.3
PTPN9P43378 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.91■□□□□ 0.3
PTPN9P43378 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
PTPN9P43378 AP001282.1-201ENST00000531301 1499 ntBASIC16.91■□□□□ 0.3
PTPN9P43378 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC16.91■□□□□ 0.3
PTPN9P43378 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.91■□□□□ 0.3
PTPN9P43378 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
PTPN9P43378 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.91■□□□□ 0.3
PTPN9P43378 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN9P43378 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN9P43378 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PTPN9P43378 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.9■□□□□ 0.3
PTPN9P43378 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PTPN9P43378 GPS2P2-201ENST00000430745 888 ntBASIC16.9■□□□□ 0.3
PTPN9P43378 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.9■□□□□ 0.3
PTPN9P43378 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.9■□□□□ 0.3
PTPN9P43378 ALG1L8P-201ENST00000533887 760 ntBASIC16.9■□□□□ 0.3
PTPN9P43378 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.9■□□□□ 0.3
PTPN9P43378 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
PTPN9P43378 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.9■□□□□ 0.3
PTPN9P43378 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.9■□□□□ 0.3
PTPN9P43378 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.9■□□□□ 0.3
PTPN9P43378 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN9P43378 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.9■□□□□ 0.3
PTPN9P43378 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PTPN9P43378 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.9■□□□□ 0.3
PTPN9P43378 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PTPN9P43378 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTPN9P43378 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
PTPN9P43378 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.89■□□□□ 0.3
PTPN9P43378 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PTPN9P43378 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
PTPN9P43378 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN9P43378 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.89■□□□□ 0.29
PTPN9P43378 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.89■□□□□ 0.29
PTPN9P43378 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN9P43378 AC023141.5-201ENST00000458585 616 ntBASIC16.89■□□□□ 0.29
PTPN9P43378 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PTPN9P43378 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN9P43378 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.89■□□□□ 0.29
PTPN9P43378 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PTPN9P43378 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PTPN9P43378 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PTPN9P43378 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.89■□□□□ 0.29
PTPN9P43378 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.89■□□□□ 0.29
PTPN9P43378 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
PTPN9P43378 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTPN9P43378 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PTPN9P43378 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.88■□□□□ 0.29
PTPN9P43378 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PTPN9P43378 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.88■□□□□ 0.29
PTPN9P43378 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms