Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BRCA1P38398 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BRCA1P38398 ACKR1-201ENST00000368121 1240 ntBASIC19.37■□□□□ 0.69
BRCA1P38398 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC19.37■□□□□ 0.69
BRCA1P38398 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRCA1P38398 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC19.37■□□□□ 0.69
BRCA1P38398 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC19.37■□□□□ 0.69
BRCA1P38398 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC19.37■□□□□ 0.69
BRCA1P38398 GPX4-206ENST00000588919 803 ntTSL 2 BASIC19.37■□□□□ 0.69
BRCA1P38398 KLK11-210ENST00000600362 759 ntTSL 3 BASIC19.37■□□□□ 0.69
BRCA1P38398 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
BRCA1P38398 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
BRCA1P38398 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRCA1P38398 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRCA1P38398 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRCA1P38398 AL592424.1-201ENST00000563624 1536 ntBASIC19.37■□□□□ 0.69
BRCA1P38398 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRCA1P38398 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
BRCA1P38398 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC19.37■□□□□ 0.69
BRCA1P38398 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC19.37■□□□□ 0.69
BRCA1P38398 AL133267.1-201ENST00000398220 340 ntBASIC19.37■□□□□ 0.69
BRCA1P38398 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BRCA1P38398 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRCA1P38398 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC19.37■□□□□ 0.69
BRCA1P38398 AC008267.1-201ENST00000474858 1069 ntBASIC19.37■□□□□ 0.69
BRCA1P38398 KRT18P25-201ENST00000508931 1278 ntBASIC19.37■□□□□ 0.69
BRCA1P38398 AC134698.3-201ENST00000523880 214 ntBASIC19.37■□□□□ 0.69
BRCA1P38398 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
BRCA1P38398 MIR3907-201ENST00000579424 151 ntBASIC19.37■□□□□ 0.69
BRCA1P38398 AC026740.1-201ENST00000607068 791 ntBASIC19.37■□□□□ 0.69
BRCA1P38398 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC19.37■□□□□ 0.69
BRCA1P38398 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BRCA1P38398 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
BRCA1P38398 AC134043.2-201ENST00000624206 2238 ntBASIC19.36■□□□□ 0.69
BRCA1P38398 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BRCA1P38398 AC004408.2-201ENST00000623613 2777 ntBASIC19.36■□□□□ 0.69
BRCA1P38398 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
BRCA1P38398 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BRCA1P38398 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BRCA1P38398 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC19.36■□□□□ 0.69
BRCA1P38398 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BRCA1P38398 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
BRCA1P38398 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BRCA1P38398 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC19.36■□□□□ 0.69
BRCA1P38398 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC19.36■□□□□ 0.69
BRCA1P38398 AF254983.2-201ENST00000612331 135 ntBASIC19.36■□□□□ 0.69
BRCA1P38398 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC19.36■□□□□ 0.69
BRCA1P38398 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.36■□□□□ 0.69
BRCA1P38398 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
BRCA1P38398 AMT-233ENST00000636522 1620 ntTSL 2 BASIC19.36■□□□□ 0.69
BRCA1P38398 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.36■□□□□ 0.69
BRCA1P38398 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BRCA1P38398 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC19.36■□□□□ 0.69
BRCA1P38398 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.36■□□□□ 0.69
BRCA1P38398 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRCA1P38398 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
BRCA1P38398 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRCA1P38398 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
BRCA1P38398 MIR769-201ENST00000390225 118 ntBASIC19.35■□□□□ 0.69
BRCA1P38398 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC19.35■□□□□ 0.69
BRCA1P38398 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC19.35■□□□□ 0.69
BRCA1P38398 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
BRCA1P38398 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
BRCA1P38398 AC013355.1-201ENST00000562625 723 ntBASIC19.35■□□□□ 0.69
BRCA1P38398 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC19.35■□□□□ 0.69
BRCA1P38398 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
BRCA1P38398 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
BRCA1P38398 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRCA1P38398 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
BRCA1P38398 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
BRCA1P38398 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.35■□□□□ 0.69
BRCA1P38398 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.35■□□□□ 0.69
BRCA1P38398 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC19.35■□□□□ 0.69
BRCA1P38398 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
BRCA1P38398 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
BRCA1P38398 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRCA1P38398 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
BRCA1P38398 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
BRCA1P38398 NUP210P1-202ENST00000504322 710 ntBASIC19.35■□□□□ 0.69
BRCA1P38398 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC19.35■□□□□ 0.69
BRCA1P38398 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BRCA1P38398 AC008132.1-202ENST00000342005 1389 ntBASIC19.35■□□□□ 0.69
BRCA1P38398 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
BRCA1P38398 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
BRCA1P38398 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.34■□□□□ 0.69
BRCA1P38398 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
BRCA1P38398 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
BRCA1P38398 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.34■□□□□ 0.69
BRCA1P38398 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC19.34■□□□□ 0.69
BRCA1P38398 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 AC126915.1-201ENST00000522847 1038 ntBASIC19.34■□□□□ 0.69
BRCA1P38398 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BRCA1P38398 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms