Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC21.33■■□□□ 1.01
HOXC9P31274 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC21.33■■□□□ 1.01
HOXC9P31274 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC21.33■■□□□ 1.01
HOXC9P31274 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC21.33■■□□□ 1.01
HOXC9P31274 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC21.33■■□□□ 1.01
HOXC9P31274 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC21.33■■□□□ 1.01
HOXC9P31274 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
HOXC9P31274 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC21.33■■□□□ 1.01
HOXC9P31274 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC21.33■■□□□ 1
HOXC9P31274 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC21.33■■□□□ 1
HOXC9P31274 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC21.33■■□□□ 1
HOXC9P31274 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
HOXC9P31274 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HOXC9P31274 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1
HOXC9P31274 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HOXC9P31274 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC21.32■■□□□ 1
HOXC9P31274 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC21.32■■□□□ 1
HOXC9P31274 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
HOXC9P31274 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HOXC9P31274 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HOXC9P31274 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC21.32■■□□□ 1
HOXC9P31274 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HOXC9P31274 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HOXC9P31274 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC21.32■■□□□ 1
HOXC9P31274 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC21.32■■□□□ 1
HOXC9P31274 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC21.32■■□□□ 1
HOXC9P31274 FAM86LP-201ENST00000478302 853 ntBASIC21.32■■□□□ 1
HOXC9P31274 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC21.32■■□□□ 1
HOXC9P31274 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC21.32■■□□□ 1
HOXC9P31274 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC21.32■■□□□ 1
HOXC9P31274 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC21.32■■□□□ 1
HOXC9P31274 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HOXC9P31274 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HOXC9P31274 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
HOXC9P31274 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC21.32■■□□□ 1
HOXC9P31274 AC106886.4-201ENST00000623557 2502 ntBASIC21.32■■□□□ 1
HOXC9P31274 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC21.31■■□□□ 1
HOXC9P31274 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
HOXC9P31274 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC21.31■■□□□ 1
HOXC9P31274 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
HOXC9P31274 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC21.31■■□□□ 1
HOXC9P31274 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
HOXC9P31274 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
HOXC9P31274 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 ME2P1-201ENST00000426028 1970 ntBASIC21.31■■□□□ 1
HOXC9P31274 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC21.31■■□□□ 1
HOXC9P31274 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC21.31■■□□□ 1
HOXC9P31274 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
HOXC9P31274 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 TOMM22P5-201ENST00000416399 439 ntBASIC21.31■■□□□ 1
HOXC9P31274 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC21.31■■□□□ 1
HOXC9P31274 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC21.31■■□□□ 1
HOXC9P31274 KRT223P-202ENST00000449164 1292 ntBASIC21.31■■□□□ 1
HOXC9P31274 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC21.31■■□□□ 1
HOXC9P31274 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 AP005482.1-201ENST00000563722 1273 ntBASIC21.31■■□□□ 1
HOXC9P31274 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC21.31■■□□□ 1
HOXC9P31274 MIR5189-201ENST00000577370 114 ntBASIC21.31■■□□□ 1
HOXC9P31274 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC21.31■■□□□ 1
HOXC9P31274 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC21.31■■□□□ 1
HOXC9P31274 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HOXC9P31274 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC21.31■■□□□ 1
HOXC9P31274 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
HOXC9P31274 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.3■■□□□ 1
HOXC9P31274 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HOXC9P31274 KRT8P22-201ENST00000562317 1415 ntBASIC21.3■■□□□ 1
HOXC9P31274 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC21.3■■□□□ 1
HOXC9P31274 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC21.3■■□□□ 1
HOXC9P31274 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC21.3■■□□□ 1
HOXC9P31274 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC21.3■■□□□ 1
HOXC9P31274 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC21.3■■□□□ 1
HOXC9P31274 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC21.3■■□□□ 1
HOXC9P31274 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC21.3■■□□□ 1
HOXC9P31274 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC21.3■■□□□ 1
HOXC9P31274 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC21.3■■□□□ 1
HOXC9P31274 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC21.3■■□□□ 1
HOXC9P31274 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
HOXC9P31274 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC21.3■■□□□ 1
HOXC9P31274 AL359711.2-201ENST00000563105 872 ntBASIC21.3■■□□□ 1
HOXC9P31274 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC21.3■■□□□ 1
HOXC9P31274 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC21.3■■□□□ 1
HOXC9P31274 AC233724.13-201ENST00000598383 410 ntBASIC21.3■■□□□ 1
HOXC9P31274 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
HOXC9P31274 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HOXC9P31274 HNRNPA1P48-201ENST00000562726 1377 ntBASIC21.3■■□□□ 1
HOXC9P31274 AC018665.1-201ENST00000622927 1362 ntBASIC21.3■■□□□ 1
HOXC9P31274 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC21.3■■□□□ 1
HOXC9P31274 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
HOXC9P31274 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HOXC9P31274 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
HOXC9P31274 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms