Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TEX28P2-201ENST00000617764 1221 ntBASIC17.14■□□□□ 0.33
BDNFP23560 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
BDNFP23560 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BDNFP23560 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
BDNFP23560 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
BDNFP23560 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BDNFP23560 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
BDNFP23560 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.14■□□□□ 0.33
BDNFP23560 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC17.14■□□□□ 0.33
BDNFP23560 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
BDNFP23560 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
BDNFP23560 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.13■□□□□ 0.33
BDNFP23560 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.13■□□□□ 0.33
BDNFP23560 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.13■□□□□ 0.33
BDNFP23560 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
BDNFP23560 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
BDNFP23560 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
BDNFP23560 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.13■□□□□ 0.33
BDNFP23560 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 TSSK5P-201ENST00000423978 907 ntBASIC17.13■□□□□ 0.33
BDNFP23560 AC004890.2-204ENST00000481968 304 ntBASIC17.13■□□□□ 0.33
BDNFP23560 MIR3197-201ENST00000582241 73 ntBASIC17.13■□□□□ 0.33
BDNFP23560 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 AC026979.3-201ENST00000607315 403 ntBASIC17.13■□□□□ 0.33
BDNFP23560 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.13■□□□□ 0.33
BDNFP23560 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.13■□□□□ 0.33
BDNFP23560 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.13■□□□□ 0.33
BDNFP23560 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.13■□□□□ 0.33
BDNFP23560 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
BDNFP23560 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.12■□□□□ 0.33
BDNFP23560 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.12■□□□□ 0.33
BDNFP23560 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.12■□□□□ 0.33
BDNFP23560 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.12■□□□□ 0.33
BDNFP23560 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.12■□□□□ 0.33
BDNFP23560 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.12■□□□□ 0.33
BDNFP23560 MIR4745-201ENST00000577608 62 ntBASIC17.12■□□□□ 0.33
BDNFP23560 LINC02084-201ENST00000606069 1096 ntBASIC17.12■□□□□ 0.33
BDNFP23560 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.12■□□□□ 0.33
BDNFP23560 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.12■□□□□ 0.33
BDNFP23560 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC17.12■□□□□ 0.33
BDNFP23560 AL662844.4-201ENST00000606367 2838 ntBASIC17.12■□□□□ 0.33
BDNFP23560 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
BDNFP23560 CROCCP1-201ENST00000426910 5675 ntBASIC17.12■□□□□ 0.33
BDNFP23560 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.12■□□□□ 0.33
BDNFP23560 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
BDNFP23560 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
BDNFP23560 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.12■□□□□ 0.33
BDNFP23560 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
BDNFP23560 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.12■□□□□ 0.33
BDNFP23560 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
BDNFP23560 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.12■□□□□ 0.33
BDNFP23560 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
BDNFP23560 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
BDNFP23560 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.11■□□□□ 0.33
BDNFP23560 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
BDNFP23560 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
BDNFP23560 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.11■□□□□ 0.33
BDNFP23560 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.11■□□□□ 0.33
BDNFP23560 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
BDNFP23560 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.11■□□□□ 0.33
BDNFP23560 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.11■□□□□ 0.33
BDNFP23560 AC092364.2-201ENST00000596710 2692 ntBASIC17.11■□□□□ 0.33
BDNFP23560 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms