Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC12.7□□□□□ -0.38
CXCL1P09341 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC12.7□□□□□ -0.38
CXCL1P09341 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CXCL1P09341 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC12.7□□□□□ -0.38
CXCL1P09341 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 TSPY20P-201ENST00000450910 630 ntBASIC12.7□□□□□ -0.38
CXCL1P09341 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC12.7□□□□□ -0.38
CXCL1P09341 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC12.7□□□□□ -0.38
CXCL1P09341 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC12.7□□□□□ -0.38
CXCL1P09341 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC12.7□□□□□ -0.38
CXCL1P09341 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC12.7□□□□□ -0.38
CXCL1P09341 GPR32P1-201ENST00000601788 811 ntBASIC12.7□□□□□ -0.38
CXCL1P09341 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC12.7□□□□□ -0.38
CXCL1P09341 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC12.7□□□□□ -0.38
CXCL1P09341 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CXCL1P09341 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC12.7□□□□□ -0.38
CXCL1P09341 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 GPR89P-201ENST00000407924 1495 ntBASIC12.7□□□□□ -0.38
CXCL1P09341 DGCR9-201ENST00000609630 2415 ntBASIC12.7□□□□□ -0.38
CXCL1P09341 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 AC087481.3-201ENST00000602886 1894 ntBASIC12.7□□□□□ -0.38
CXCL1P09341 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CXCL1P09341 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC12.7□□□□□ -0.38
CXCL1P09341 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.7□□□□□ -0.38
CXCL1P09341 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
CXCL1P09341 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
CXCL1P09341 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC12.69□□□□□ -0.38
CXCL1P09341 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
CXCL1P09341 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CXCL1P09341 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CXCL1P09341 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC12.69□□□□□ -0.38
CXCL1P09341 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC12.69□□□□□ -0.38
CXCL1P09341 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.69□□□□□ -0.38
CXCL1P09341 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
CXCL1P09341 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC12.69□□□□□ -0.38
CXCL1P09341 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC12.69□□□□□ -0.38
CXCL1P09341 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CXCL1P09341 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC12.69□□□□□ -0.38
CXCL1P09341 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC12.69□□□□□ -0.38
CXCL1P09341 AC109462.3-201ENST00000573934 613 ntBASIC12.69□□□□□ -0.38
CXCL1P09341 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC12.69□□□□□ -0.38
CXCL1P09341 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC12.69□□□□□ -0.38
CXCL1P09341 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC12.69□□□□□ -0.38
CXCL1P09341 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
CXCL1P09341 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
CXCL1P09341 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CXCL1P09341 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC12.69□□□□□ -0.38
CXCL1P09341 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
CXCL1P09341 LINC00895-201ENST00000629028 1637 ntBASIC12.69□□□□□ -0.38
CXCL1P09341 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CXCL1P09341 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
CXCL1P09341 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms