Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 AP003680.1-201ENST00000598970 3660 ntBASIC18.81■□□□□ 0.6
CTDNEP1O95476 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 FAM220BP-201ENST00000377689 816 ntBASIC18.81■□□□□ 0.6
CTDNEP1O95476 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 AC022145.2-201ENST00000598203 171 ntBASIC18.81■□□□□ 0.6
CTDNEP1O95476 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CTDNEP1O95476 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.81■□□□□ 0.6
CTDNEP1O95476 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.8■□□□□ 0.6
CTDNEP1O95476 AC011477.6-201ENST00000604980 1927 ntBASIC18.8■□□□□ 0.6
CTDNEP1O95476 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.8■□□□□ 0.6
CTDNEP1O95476 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.8■□□□□ 0.6
CTDNEP1O95476 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CTDNEP1O95476 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.8■□□□□ 0.6
CTDNEP1O95476 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.8■□□□□ 0.6
CTDNEP1O95476 SLC25A39P2-201ENST00000537614 270 ntBASIC18.8■□□□□ 0.6
CTDNEP1O95476 AC093520.2-201ENST00000561830 333 ntBASIC18.8■□□□□ 0.6
CTDNEP1O95476 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC18.8■□□□□ 0.6
CTDNEP1O95476 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.8■□□□□ 0.6
CTDNEP1O95476 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
CTDNEP1O95476 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.8■□□□□ 0.6
CTDNEP1O95476 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.8■□□□□ 0.6
CTDNEP1O95476 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.8■□□□□ 0.6
CTDNEP1O95476 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CTDNEP1O95476 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.8■□□□□ 0.6
CTDNEP1O95476 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTDNEP1O95476 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTDNEP1O95476 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CTDNEP1O95476 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTDNEP1O95476 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTDNEP1O95476 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTDNEP1O95476 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTDNEP1O95476 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTDNEP1O95476 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTDNEP1O95476 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 AC112482.1-201ENST00000492080 688 ntBASIC18.79■□□□□ 0.6
CTDNEP1O95476 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 AC005829.1-201ENST00000570002 483 ntBASIC18.79■□□□□ 0.6
CTDNEP1O95476 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTDNEP1O95476 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTDNEP1O95476 AL691432.1-201ENST00000596308 1422 ntBASIC18.79■□□□□ 0.6
CTDNEP1O95476 AL136982.4-201ENST00000437689 1740 ntBASIC18.79■□□□□ 0.6
CTDNEP1O95476 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CTDNEP1O95476 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
CTDNEP1O95476 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CTDNEP1O95476 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms