Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC15.17■□□□□ 0.02
PRKNO60260 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.17■□□□□ 0.02
PRKNO60260 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.17■□□□□ 0.02
PRKNO60260 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PRKNO60260 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
PRKNO60260 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.17■□□□□ 0.02
PRKNO60260 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.17■□□□□ 0.02
PRKNO60260 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.17■□□□□ 0.02
PRKNO60260 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.17■□□□□ 0.02
PRKNO60260 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.17■□□□□ 0.02
PRKNO60260 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.17■□□□□ 0.02
PRKNO60260 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.17■□□□□ 0.02
PRKNO60260 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.17■□□□□ 0.02
PRKNO60260 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.17■□□□□ 0.02
PRKNO60260 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.17■□□□□ 0.02
PRKNO60260 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.17■□□□□ 0.02
PRKNO60260 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 AL355385.1-201ENST00000606123 409 ntBASIC15.17■□□□□ 0.02
PRKNO60260 MIR6080-201ENST00000617359 66 ntBASIC15.17■□□□□ 0.02
PRKNO60260 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.17■□□□□ 0.02
PRKNO60260 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.17■□□□□ 0.02
PRKNO60260 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
PRKNO60260 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PRKNO60260 AL589702.1-201ENST00000641229 1509 ntBASIC15.17■□□□□ 0.02
PRKNO60260 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PRKNO60260 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
PRKNO60260 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
PRKNO60260 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
PRKNO60260 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.16■□□□□ 0.02
PRKNO60260 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
PRKNO60260 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.16■□□□□ 0.02
PRKNO60260 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.16■□□□□ 0.02
PRKNO60260 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.16■□□□□ 0.02
PRKNO60260 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.16■□□□□ 0.02
PRKNO60260 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
PRKNO60260 AC098859.1-201ENST00000502915 1238 ntBASIC15.16■□□□□ 0.02
PRKNO60260 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.16■□□□□ 0.02
PRKNO60260 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.16■□□□□ 0.02
PRKNO60260 MIR4453-201ENST00000584019 89 ntBASIC15.16■□□□□ 0.02
PRKNO60260 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
PRKNO60260 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.16■□□□□ 0.02
PRKNO60260 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.16■□□□□ 0.02
PRKNO60260 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
PRKNO60260 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PRKNO60260 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PRKNO60260 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.15■□□□□ 0.02
PRKNO60260 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.15■□□□□ 0.02
PRKNO60260 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.15■□□□□ 0.02
PRKNO60260 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.15■□□□□ 0.02
PRKNO60260 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PRKNO60260 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.15■□□□□ 0.02
PRKNO60260 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
PRKNO60260 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
PRKNO60260 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.15■□□□□ 0.02
PRKNO60260 FAM86GP-201ENST00000448322 971 ntBASIC15.15■□□□□ 0.02
PRKNO60260 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.15■□□□□ 0.02
PRKNO60260 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 DUX4L27-201ENST00000554796 1261 ntBASIC15.15■□□□□ 0.02
PRKNO60260 AC051619.7-201ENST00000568314 623 ntBASIC15.15■□□□□ 0.02
PRKNO60260 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 AC015911.4-201ENST00000588022 1070 ntBASIC15.15■□□□□ 0.02
PRKNO60260 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PRKNO60260 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
PRKNO60260 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms