Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 HCG24-202ENST00000414398 717 ntTSL 3 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 AC245100.5-201ENST00000452108 331 ntBASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VPS9D1Q9Y2B5 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 SLC25A1P1-201ENST00000528351 927 ntBASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 AL365223.1-201ENST00000574864 1297 ntBASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 AP002472.1-201ENST00000577490 586 ntBASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 AC004223.2-201ENST00000590309 544 ntBASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 AP001542.1-201ENST00000591314 200 ntBASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.27■□□□□ 0.2
VPS9D1Q9Y2B5 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VPS9D1Q9Y2B5 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS9D1Q9Y2B5 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.19
VPS9D1Q9Y2B5 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS9D1Q9Y2B5 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VPS9D1Q9Y2B5 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
VPS9D1Q9Y2B5 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS9D1Q9Y2B5 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VPS9D1Q9Y2B5 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VPS9D1Q9Y2B5 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.27■□□□□ 0.19
VPS9D1Q9Y2B5 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 AC073439.1-201ENST00000624121 1774 ntBASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 PMS2P7-201ENST00000506558 1336 ntBASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
VPS9D1Q9Y2B5 PRYP6-201ENST00000514804 343 ntBASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms