Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC39Q9UFE4 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 AC091167.2-201ENST00000579581 588 ntBASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 AC104692.2-201ENST00000603054 253 ntBASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 FAM215A-202ENST00000632077 792 ntBASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC39Q9UFE4 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
CCDC39Q9UFE4 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CCDC39Q9UFE4 AL031284.1-201ENST00000419297 478 ntBASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms