Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.65■□□□□ 0.58
USP28Q96RU2 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.65■□□□□ 0.58
USP28Q96RU2 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.65■□□□□ 0.58
USP28Q96RU2 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
USP28Q96RU2 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.65■□□□□ 0.58
USP28Q96RU2 AC007967.2-201ENST00000432613 625 ntBASIC18.65■□□□□ 0.58
USP28Q96RU2 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.65■□□□□ 0.58
USP28Q96RU2 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 MAL2-202ENST00000531508 892 ntTSL 3 BASIC18.65■□□□□ 0.58
USP28Q96RU2 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.65■□□□□ 0.58
USP28Q96RU2 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.65■□□□□ 0.58
USP28Q96RU2 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.65■□□□□ 0.58
USP28Q96RU2 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.65■□□□□ 0.58
USP28Q96RU2 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC18.65■□□□□ 0.58
USP28Q96RU2 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.65■□□□□ 0.58
USP28Q96RU2 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
USP28Q96RU2 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.65■□□□□ 0.58
USP28Q96RU2 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.65■□□□□ 0.58
USP28Q96RU2 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.65■□□□□ 0.58
USP28Q96RU2 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
USP28Q96RU2 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
USP28Q96RU2 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
USP28Q96RU2 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.64■□□□□ 0.58
USP28Q96RU2 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.64■□□□□ 0.58
USP28Q96RU2 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
USP28Q96RU2 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
USP28Q96RU2 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.64■□□□□ 0.58
USP28Q96RU2 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
USP28Q96RU2 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
USP28Q96RU2 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.64■□□□□ 0.57
USP28Q96RU2 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.64■□□□□ 0.57
USP28Q96RU2 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 CASK-202ENST00000378158 3848 ntTSL 5 BASIC18.64■□□□□ 0.57
USP28Q96RU2 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
USP28Q96RU2 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.64■□□□□ 0.57
USP28Q96RU2 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
USP28Q96RU2 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.64■□□□□ 0.57
USP28Q96RU2 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.64■□□□□ 0.57
USP28Q96RU2 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.64■□□□□ 0.57
USP28Q96RU2 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.64■□□□□ 0.57
USP28Q96RU2 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.64■□□□□ 0.57
USP28Q96RU2 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC18.64■□□□□ 0.57
USP28Q96RU2 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
USP28Q96RU2 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
USP28Q96RU2 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.64■□□□□ 0.57
USP28Q96RU2 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
USP28Q96RU2 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.64■□□□□ 0.57
USP28Q96RU2 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.64■□□□□ 0.57
USP28Q96RU2 AC013268.4-201ENST00000637413 2228 ntBASIC18.64■□□□□ 0.57
USP28Q96RU2 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
USP28Q96RU2 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.63■□□□□ 0.57
USP28Q96RU2 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
USP28Q96RU2 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.63■□□□□ 0.57
USP28Q96RU2 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.63■□□□□ 0.57
USP28Q96RU2 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
USP28Q96RU2 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
USP28Q96RU2 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.63■□□□□ 0.57
USP28Q96RU2 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.63■□□□□ 0.57
USP28Q96RU2 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
USP28Q96RU2 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.63■□□□□ 0.57
USP28Q96RU2 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms