Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC004835.2-201ENST00000603762 682 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AL138828.2-201ENST00000615812 383 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC002558.1-201ENST00000488906 803 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC004790.1-201ENST00000612686 536 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 USO1-201ENST00000264904 4135 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AL354751.1-201ENST00000412768 1863 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 IP6K1-202ENST00000395238 4117 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 CALY-202ENST00000368555 783 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC005034.1-201ENST00000426657 489 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC015922.1-201ENST00000421102 1152 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 SSH2-211ENST00000590153 570 ntTSL 4 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC107918.2-201ENST00000530817 355 ntBASIC5.08□□□□□ -1.6
SYNE1Q8NF91 AC243562.1-201ENST00000560672 389 ntBASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms