Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AHCYP2-201ENST00000430630 1300 ntBASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC1BQ8NDV3 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 LINC00304-203ENST00000565008 1864 ntBASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 CNN2P8-201ENST00000421872 913 ntBASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 AC245884.6-201ENST00000515672 1067 ntBASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 AC097724.1-201ENST00000609581 426 ntBASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 CU633904.3-201ENST00000624042 1029 ntBASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC19.18■□□□□ 0.66
SMC1BQ8NDV3 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 KRTAP19-9P-201ENST00000421795 191 ntBASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AC093724.1-201ENST00000448659 1027 ntBASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 ATP6V0CP2-201ENST00000469409 207 ntBASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 RN7SL720P-201ENST00000488178 304 ntBASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 KLK3-207ENST00000595952 969 ntTSL 3 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AL353726.2-201ENST00000623259 884 ntBASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AC009113.1-201ENST00000570267 2443 ntBASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 Z97205.2-201ENST00000564697 1639 ntBASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SMC1BQ8NDV3 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 AL390961.4-201ENST00000623958 2535 ntBASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SMC1BQ8NDV3 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms