Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB1Q86U70 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
LDB1Q86U70 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.31■□□□□ 0.2
LDB1Q86U70 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.31■□□□□ 0.2
LDB1Q86U70 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.31■□□□□ 0.2
LDB1Q86U70 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.31■□□□□ 0.2
LDB1Q86U70 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.31■□□□□ 0.2
LDB1Q86U70 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB1Q86U70 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
LDB1Q86U70 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LDB1Q86U70 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB1Q86U70 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
LDB1Q86U70 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
LDB1Q86U70 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB1Q86U70 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB1Q86U70 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
LDB1Q86U70 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.3■□□□□ 0.2
LDB1Q86U70 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 AC002056.1-201ENST00000395613 760 ntBASIC16.3■□□□□ 0.2
LDB1Q86U70 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.3■□□□□ 0.2
LDB1Q86U70 FAM58CP-201ENST00000435741 640 ntBASIC16.3■□□□□ 0.2
LDB1Q86U70 AC112191.1-201ENST00000523689 701 ntBASIC16.3■□□□□ 0.2
LDB1Q86U70 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.3■□□□□ 0.2
LDB1Q86U70 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.3■□□□□ 0.2
LDB1Q86U70 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 U82695.1-201ENST00000635752 1889 ntBASIC16.3■□□□□ 0.2
LDB1Q86U70 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 FER1L4-210ENST00000615531 5998 ntBASIC16.3■□□□□ 0.2
LDB1Q86U70 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
LDB1Q86U70 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.3■□□□□ 0.2
LDB1Q86U70 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
LDB1Q86U70 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB1Q86U70 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.3■□□□□ 0.2
LDB1Q86U70 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.3■□□□□ 0.2
LDB1Q86U70 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
LDB1Q86U70 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
LDB1Q86U70 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.29■□□□□ 0.2
LDB1Q86U70 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.29■□□□□ 0.2
LDB1Q86U70 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.29■□□□□ 0.2
LDB1Q86U70 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LDB1Q86U70 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC16.29■□□□□ 0.2
LDB1Q86U70 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LDB1Q86U70 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC16.29■□□□□ 0.2
LDB1Q86U70 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 AC040169.1-201ENST00000565382 521 ntBASIC16.29■□□□□ 0.2
LDB1Q86U70 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.29■□□□□ 0.2
LDB1Q86U70 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.29■□□□□ 0.2
LDB1Q86U70 AL161645.1-201ENST00000622716 1255 ntBASIC16.29■□□□□ 0.2
LDB1Q86U70 AC092902.6-201ENST00000641783 218 ntBASIC16.29■□□□□ 0.2
LDB1Q86U70 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.29■□□□□ 0.2
LDB1Q86U70 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.29■□□□□ 0.2
LDB1Q86U70 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB1Q86U70 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms