Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.62■□□□□ 0.41
KRT39Q6A163 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.62■□□□□ 0.41
KRT39Q6A163 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.62■□□□□ 0.41
KRT39Q6A163 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.62■□□□□ 0.41
KRT39Q6A163 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.62■□□□□ 0.41
KRT39Q6A163 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC17.62■□□□□ 0.41
KRT39Q6A163 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.62■□□□□ 0.41
KRT39Q6A163 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
KRT39Q6A163 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 AL603832.2-201ENST00000566195 2125 ntBASIC17.62■□□□□ 0.41
KRT39Q6A163 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
KRT39Q6A163 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.62■□□□□ 0.41
KRT39Q6A163 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
KRT39Q6A163 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.61■□□□□ 0.41
KRT39Q6A163 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
KRT39Q6A163 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.61■□□□□ 0.41
KRT39Q6A163 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
KRT39Q6A163 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.61■□□□□ 0.41
KRT39Q6A163 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
KRT39Q6A163 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
KRT39Q6A163 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
KRT39Q6A163 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
KRT39Q6A163 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.61■□□□□ 0.41
KRT39Q6A163 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.61■□□□□ 0.41
KRT39Q6A163 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.61■□□□□ 0.41
KRT39Q6A163 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
KRT39Q6A163 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.61■□□□□ 0.41
KRT39Q6A163 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 AL592309.1-201ENST00000443127 649 ntBASIC17.61■□□□□ 0.41
KRT39Q6A163 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 AC245100.5-201ENST00000452108 331 ntBASIC17.61■□□□□ 0.41
KRT39Q6A163 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.61■□□□□ 0.41
KRT39Q6A163 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.61■□□□□ 0.41
KRT39Q6A163 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.61■□□□□ 0.41
KRT39Q6A163 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.61■□□□□ 0.41
KRT39Q6A163 MIR4321-201ENST00000592276 80 ntBASIC17.61■□□□□ 0.41
KRT39Q6A163 AC022145.2-201ENST00000598203 171 ntBASIC17.61■□□□□ 0.41
KRT39Q6A163 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.61■□□□□ 0.41
KRT39Q6A163 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.61■□□□□ 0.41
KRT39Q6A163 AC084121.4-201ENST00000641598 221 ntBASIC17.61■□□□□ 0.41
KRT39Q6A163 AF228730.8-201ENST00000642140 221 ntBASIC17.61■□□□□ 0.41
KRT39Q6A163 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.61■□□□□ 0.41
KRT39Q6A163 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.61■□□□□ 0.41
KRT39Q6A163 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
KRT39Q6A163 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
KRT39Q6A163 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.61■□□□□ 0.41
KRT39Q6A163 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
KRT39Q6A163 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
KRT39Q6A163 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 AC024909.3-201ENST00000611513 2257 ntBASIC17.6■□□□□ 0.41
KRT39Q6A163 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.6■□□□□ 0.41
KRT39Q6A163 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.6■□□□□ 0.41
KRT39Q6A163 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
KRT39Q6A163 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.6■□□□□ 0.41
KRT39Q6A163 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.6■□□□□ 0.41
KRT39Q6A163 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.6■□□□□ 0.41
KRT39Q6A163 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.6■□□□□ 0.41
KRT39Q6A163 AC069335.1-201ENST00000489972 472 ntBASIC17.6■□□□□ 0.41
KRT39Q6A163 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
KRT39Q6A163 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.6■□□□□ 0.41
KRT39Q6A163 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.6■□□□□ 0.41
KRT39Q6A163 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17.6■□□□□ 0.41
KRT39Q6A163 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
KRT39Q6A163 AL513210.1-201ENST00000629608 234 ntBASIC17.6■□□□□ 0.41
KRT39Q6A163 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.6■□□□□ 0.41
KRT39Q6A163 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.6■□□□□ 0.41
KRT39Q6A163 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
KRT39Q6A163 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms