Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 AC016027.1-202ENST00000607927 1699 ntBASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 KRT18P34-201ENST00000488218 1270 ntBASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 AC022145.2-201ENST00000598203 171 ntBASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 AC004835.2-201ENST00000603762 682 ntBASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 AC099522.2-201ENST00000607001 744 ntBASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.98■□□□□ 0.15
PTCHD3Q3KNS1 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 AL355306.1-201ENST00000415580 579 ntBASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 ADH5P3-201ENST00000433842 1137 ntBASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTCHD3Q3KNS1 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTCHD3Q3KNS1 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms