Protein–RNA interactions for Protein: Q08945

SSRP1, FACT complex subunit SSRP1, humanhuman

Known RBP Predictions only

Length 709 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1Q08945 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.93■□□□□ 0.62
SSRP1Q08945 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18.93■□□□□ 0.62
SSRP1Q08945 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 MIR648-201ENST00000385046 94 ntBASIC18.93■□□□□ 0.62
SSRP1Q08945 RPSAP43-201ENST00000402237 625 ntBASIC18.93■□□□□ 0.62
SSRP1Q08945 GPX1P2-201ENST00000429271 606 ntBASIC18.93■□□□□ 0.62
SSRP1Q08945 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.93■□□□□ 0.62
SSRP1Q08945 AC098859.1-201ENST00000502915 1238 ntBASIC18.93■□□□□ 0.62
SSRP1Q08945 IGHV3-62-201ENST00000520057 340 ntBASIC18.93■□□□□ 0.62
SSRP1Q08945 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC18.93■□□□□ 0.62
SSRP1Q08945 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.93■□□□□ 0.62
SSRP1Q08945 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.93■□□□□ 0.62
SSRP1Q08945 LINC01225-203ENST00000563550 1244 ntBASIC18.93■□□□□ 0.62
SSRP1Q08945 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.93■□□□□ 0.62
SSRP1Q08945 MIR4469-201ENST00000583919 79 ntBASIC18.93■□□□□ 0.62
SSRP1Q08945 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.93■□□□□ 0.62
SSRP1Q08945 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.93■□□□□ 0.62
SSRP1Q08945 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.93■□□□□ 0.62
SSRP1Q08945 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC18.93■□□□□ 0.62
SSRP1Q08945 FOXO1B-201ENST00000504678 1527 ntBASIC18.93■□□□□ 0.62
SSRP1Q08945 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
SSRP1Q08945 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.93■□□□□ 0.62
SSRP1Q08945 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSRP1Q08945 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SSRP1Q08945 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.93■□□□□ 0.62
SSRP1Q08945 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SSRP1Q08945 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSRP1Q08945 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSRP1Q08945 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
SSRP1Q08945 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.92■□□□□ 0.62
SSRP1Q08945 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSRP1Q08945 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.92■□□□□ 0.62
SSRP1Q08945 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.92■□□□□ 0.62
SSRP1Q08945 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSRP1Q08945 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.92■□□□□ 0.62
SSRP1Q08945 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSRP1Q08945 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.92■□□□□ 0.62
SSRP1Q08945 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC18.92■□□□□ 0.62
SSRP1Q08945 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.92■□□□□ 0.62
SSRP1Q08945 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
SSRP1Q08945 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
SSRP1Q08945 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SSRP1Q08945 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.92■□□□□ 0.62
SSRP1Q08945 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.92■□□□□ 0.62
SSRP1Q08945 UPF3AP3-201ENST00000420996 769 ntBASIC18.92■□□□□ 0.62
SSRP1Q08945 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.92■□□□□ 0.62
SSRP1Q08945 AL592309.1-201ENST00000443127 649 ntBASIC18.92■□□□□ 0.62
SSRP1Q08945 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.92■□□□□ 0.62
SSRP1Q08945 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SSRP1Q08945 YBX1P5-201ENST00000509441 847 ntBASIC18.92■□□□□ 0.62
SSRP1Q08945 AC092865.5-201ENST00000545435 363 ntBASIC18.92■□□□□ 0.62
SSRP1Q08945 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SSRP1Q08945 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.92■□□□□ 0.62
SSRP1Q08945 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SSRP1Q08945 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SSRP1Q08945 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
SSRP1Q08945 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SSRP1Q08945 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.92■□□□□ 0.62
SSRP1Q08945 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSRP1Q08945 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
SSRP1Q08945 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSRP1Q08945 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSRP1Q08945 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSRP1Q08945 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.91■□□□□ 0.62
SSRP1Q08945 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
SSRP1Q08945 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSRP1Q08945 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSRP1Q08945 AL603832.2-201ENST00000566195 2125 ntBASIC18.91■□□□□ 0.62
SSRP1Q08945 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
SSRP1Q08945 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.91■□□□□ 0.62
SSRP1Q08945 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSRP1Q08945 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSRP1Q08945 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.91■□□□□ 0.62
SSRP1Q08945 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.91■□□□□ 0.62
SSRP1Q08945 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.91■□□□□ 0.62
SSRP1Q08945 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.91■□□□□ 0.62
SSRP1Q08945 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.91■□□□□ 0.62
SSRP1Q08945 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.91■□□□□ 0.62
SSRP1Q08945 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.91■□□□□ 0.62
SSRP1Q08945 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.91■□□□□ 0.62
SSRP1Q08945 AC105339.1-204ENST00000636249 355 ntBASIC18.91■□□□□ 0.62
SSRP1Q08945 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SSRP1Q08945 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.91■□□□□ 0.62
SSRP1Q08945 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSRP1Q08945 AC024909.3-201ENST00000611513 2257 ntBASIC18.91■□□□□ 0.62
SSRP1Q08945 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SSRP1Q08945 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSRP1Q08945 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms