Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
TFF3Q07654 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.31□□□□□ -0.12
TFF3Q07654 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TFF3Q07654 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TFF3Q07654 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
TFF3Q07654 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC14.31□□□□□ -0.12
TFF3Q07654 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
TFF3Q07654 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.31□□□□□ -0.12
TFF3Q07654 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
TFF3Q07654 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.31□□□□□ -0.12
TFF3Q07654 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.31□□□□□ -0.12
TFF3Q07654 ACA64.2-201ENST00000459014 129 ntBASIC14.31□□□□□ -0.12
TFF3Q07654 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
TFF3Q07654 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.31□□□□□ -0.12
TFF3Q07654 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC14.31□□□□□ -0.12
TFF3Q07654 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.31□□□□□ -0.12
TFF3Q07654 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.31□□□□□ -0.12
TFF3Q07654 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.31□□□□□ -0.12
TFF3Q07654 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.31□□□□□ -0.12
TFF3Q07654 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.31□□□□□ -0.12
TFF3Q07654 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.31□□□□□ -0.12
TFF3Q07654 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
TFF3Q07654 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.31□□□□□ -0.12
TFF3Q07654 UBALD1-205ENST00000590891 2641 ntBASIC14.31□□□□□ -0.12
TFF3Q07654 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
TFF3Q07654 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.31□□□□□ -0.12
TFF3Q07654 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.31□□□□□ -0.12
TFF3Q07654 SLC7A15P-201ENST00000424028 1363 ntBASIC14.31□□□□□ -0.12
TFF3Q07654 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC14.31□□□□□ -0.12
TFF3Q07654 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TFF3Q07654 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
TFF3Q07654 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
TFF3Q07654 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC14.31□□□□□ -0.12
TFF3Q07654 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
TFF3Q07654 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.31□□□□□ -0.12
TFF3Q07654 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC14.3□□□□□ -0.12
TFF3Q07654 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.3□□□□□ -0.12
TFF3Q07654 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
TFF3Q07654 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.3□□□□□ -0.12
TFF3Q07654 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.3□□□□□ -0.12
TFF3Q07654 SPDYE17-201ENST00000412399 783 ntBASIC14.3□□□□□ -0.12
TFF3Q07654 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.3□□□□□ -0.12
TFF3Q07654 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.3□□□□□ -0.12
TFF3Q07654 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.3□□□□□ -0.12
TFF3Q07654 AC093724.1-201ENST00000448659 1027 ntBASIC14.3□□□□□ -0.12
TFF3Q07654 AC011495.1-201ENST00000498085 584 ntBASIC14.3□□□□□ -0.12
TFF3Q07654 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.3□□□□□ -0.12
TFF3Q07654 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.3□□□□□ -0.12
TFF3Q07654 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.3□□□□□ -0.12
TFF3Q07654 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.3□□□□□ -0.12
TFF3Q07654 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.3□□□□□ -0.12
TFF3Q07654 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 AC017083.2-201ENST00000608069 979 ntBASIC14.3□□□□□ -0.12
TFF3Q07654 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.3□□□□□ -0.12
TFF3Q07654 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 AC092053.1-201ENST00000605787 1936 ntBASIC14.3□□□□□ -0.12
TFF3Q07654 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC14.3□□□□□ -0.12
TFF3Q07654 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 KRT8P12-202ENST00000472924 1397 ntBASIC14.3□□□□□ -0.12
TFF3Q07654 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC14.3□□□□□ -0.12
TFF3Q07654 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.3□□□□□ -0.12
TFF3Q07654 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
TFF3Q07654 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
TFF3Q07654 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
TFF3Q07654 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TFF3Q07654 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
TFF3Q07654 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TFF3Q07654 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TFF3Q07654 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
TFF3Q07654 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TFF3Q07654 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
TFF3Q07654 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TFF3Q07654 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.29□□□□□ -0.12
TFF3Q07654 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TFF3Q07654 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
TFF3Q07654 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC14.29□□□□□ -0.12
TFF3Q07654 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC14.29□□□□□ -0.12
TFF3Q07654 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
TFF3Q07654 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
TFF3Q07654 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.29□□□□□ -0.12
TFF3Q07654 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
TFF3Q07654 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
TFF3Q07654 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
TFF3Q07654 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.29□□□□□ -0.12
TFF3Q07654 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.29□□□□□ -0.12
TFF3Q07654 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms