Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC14.02□□□□□ -0.17
ABCA4P78363 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.02□□□□□ -0.17
ABCA4P78363 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC14.02□□□□□ -0.17
ABCA4P78363 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
ABCA4P78363 RN7SL752P-201ENST00000463779 287 ntBASIC14.02□□□□□ -0.17
ABCA4P78363 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.02□□□□□ -0.17
ABCA4P78363 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.02□□□□□ -0.17
ABCA4P78363 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.02□□□□□ -0.17
ABCA4P78363 AP003680.1-201ENST00000598970 3660 ntBASIC14.02□□□□□ -0.17
ABCA4P78363 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.02□□□□□ -0.17
ABCA4P78363 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
ABCA4P78363 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.01□□□□□ -0.17
ABCA4P78363 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
ABCA4P78363 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
ABCA4P78363 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.01□□□□□ -0.17
ABCA4P78363 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.01□□□□□ -0.17
ABCA4P78363 BCYRN1-201ENST00000418539 200 ntBASIC14.01□□□□□ -0.17
ABCA4P78363 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.01□□□□□ -0.17
ABCA4P78363 AC234783.1-201ENST00000441761 496 ntBASIC14.01□□□□□ -0.17
ABCA4P78363 AC093724.1-201ENST00000448659 1027 ntBASIC14.01□□□□□ -0.17
ABCA4P78363 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.01□□□□□ -0.17
ABCA4P78363 PARP8-218ENST00000513738 596 ntTSL 4 BASIC14.01□□□□□ -0.17
ABCA4P78363 RNA5SP410-201ENST00000516285 106 ntBASIC14.01□□□□□ -0.17
ABCA4P78363 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.01□□□□□ -0.17
ABCA4P78363 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
ABCA4P78363 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.01□□□□□ -0.17
ABCA4P78363 COX11-210ENST00000639671 696 ntBASIC14.01□□□□□ -0.17
ABCA4P78363 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
ABCA4P78363 AL133338.1-201ENST00000565695 1517 ntBASIC14.01□□□□□ -0.17
ABCA4P78363 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.01□□□□□ -0.17
ABCA4P78363 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
ABCA4P78363 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC14.01□□□□□ -0.17
ABCA4P78363 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.01□□□□□ -0.17
ABCA4P78363 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
ABCA4P78363 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
ABCA4P78363 NME6-203ENST00000415644 849 ntTSL 2 BASIC14.01□□□□□ -0.17
ABCA4P78363 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.01□□□□□ -0.17
ABCA4P78363 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
ABCA4P78363 AC022210.1-201ENST00000449856 793 ntBASIC14.01□□□□□ -0.17
ABCA4P78363 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.01□□□□□ -0.17
ABCA4P78363 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.01□□□□□ -0.17
ABCA4P78363 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.01□□□□□ -0.17
ABCA4P78363 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.01□□□□□ -0.17
ABCA4P78363 AC008735.3-201ENST00000596646 500 ntBASIC14.01□□□□□ -0.17
ABCA4P78363 LINC02012-201ENST00000608206 1725 ntBASIC14.01□□□□□ -0.17
ABCA4P78363 MIR6787-201ENST00000616675 61 ntBASIC14.01□□□□□ -0.17
ABCA4P78363 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.01□□□□□ -0.17
ABCA4P78363 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC14.01□□□□□ -0.17
ABCA4P78363 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.01□□□□□ -0.17
ABCA4P78363 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ABCA4P78363 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ABCA4P78363 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ABCA4P78363 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
ABCA4P78363 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC14□□□□□ -0.17
ABCA4P78363 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC14□□□□□ -0.17
ABCA4P78363 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
ABCA4P78363 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
ABCA4P78363 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ABCA4P78363 AL512652.2-201ENST00000625156 1716 ntBASIC14□□□□□ -0.17
ABCA4P78363 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ABCA4P78363 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14□□□□□ -0.17
ABCA4P78363 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
ABCA4P78363 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC14□□□□□ -0.17
ABCA4P78363 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
ABCA4P78363 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14□□□□□ -0.17
ABCA4P78363 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14□□□□□ -0.17
ABCA4P78363 AL139011.1-202ENST00000642063 584 ntBASIC14□□□□□ -0.17
ABCA4P78363 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ABCA4P78363 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
ABCA4P78363 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms