Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.09■□□□□ 0.17
CXCL12P48061 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.09■□□□□ 0.17
CXCL12P48061 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CXCL12P48061 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
CXCL12P48061 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CXCL12P48061 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.08■□□□□ 0.17
CXCL12P48061 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.08■□□□□ 0.17
CXCL12P48061 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.08■□□□□ 0.17
CXCL12P48061 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CXCL12P48061 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CXCL12P48061 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.17
CXCL12P48061 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
CXCL12P48061 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.08■□□□□ 0.16
CXCL12P48061 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 AC004987.2-201ENST00000395959 1148 ntBASIC16.08■□□□□ 0.16
CXCL12P48061 SOCS2P1-201ENST00000417727 557 ntBASIC16.08■□□□□ 0.16
CXCL12P48061 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.08■□□□□ 0.16
CXCL12P48061 RPL13P2-201ENST00000440687 659 ntBASIC16.08■□□□□ 0.16
CXCL12P48061 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
CXCL12P48061 RPL13AP25-201ENST00000484130 612 ntBASIC16.08■□□□□ 0.16
CXCL12P48061 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.08■□□□□ 0.16
CXCL12P48061 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.08■□□□□ 0.16
CXCL12P48061 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.08■□□□□ 0.16
CXCL12P48061 AC079316.1-201ENST00000548397 411 ntBASIC16.08■□□□□ 0.16
CXCL12P48061 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.08■□□□□ 0.16
CXCL12P48061 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.08■□□□□ 0.16
CXCL12P48061 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.08■□□□□ 0.16
CXCL12P48061 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
CXCL12P48061 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.08■□□□□ 0.16
CXCL12P48061 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.08■□□□□ 0.16
CXCL12P48061 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.08■□□□□ 0.16
CXCL12P48061 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.08■□□□□ 0.16
CXCL12P48061 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.08■□□□□ 0.16
CXCL12P48061 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
CXCL12P48061 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.08■□□□□ 0.16
CXCL12P48061 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.08■□□□□ 0.16
CXCL12P48061 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.08■□□□□ 0.16
CXCL12P48061 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CXCL12P48061 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.07■□□□□ 0.16
CXCL12P48061 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 AC004945.1-201ENST00000416738 983 ntBASIC16.07■□□□□ 0.16
CXCL12P48061 HLA-DPB2-205ENST00000435074 1188 ntBASIC16.07■□□□□ 0.16
CXCL12P48061 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.07■□□□□ 0.16
CXCL12P48061 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.07■□□□□ 0.16
CXCL12P48061 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.07■□□□□ 0.16
CXCL12P48061 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.07■□□□□ 0.16
CXCL12P48061 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.07■□□□□ 0.16
CXCL12P48061 AC009486.1-201ENST00000569860 813 ntBASIC16.07■□□□□ 0.16
CXCL12P48061 MIR3615-201ENST00000581999 87 ntBASIC16.07■□□□□ 0.16
CXCL12P48061 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.07■□□□□ 0.16
CXCL12P48061 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.07■□□□□ 0.16
CXCL12P48061 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.07■□□□□ 0.16
CXCL12P48061 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 LINC01144-201ENST00000626198 1710 ntBASIC16.07■□□□□ 0.16
CXCL12P48061 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CXCL12P48061 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CXCL12P48061 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CXCL12P48061 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CXCL12P48061 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CXCL12P48061 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.06■□□□□ 0.16
CXCL12P48061 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.06■□□□□ 0.16
CXCL12P48061 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.06■□□□□ 0.16
CXCL12P48061 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL12P48061 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL12P48061 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CXCL12P48061 AC006538.1-201ENST00000567905 1585 ntBASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms