Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-1P43699 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-1P43699 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-1P43699 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-1P43699 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-1P43699 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC13.43□□□□□ -0.26
NKX2-1P43699 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-1P43699 DUX4L26-201ENST00000489078 1255 ntBASIC13.43□□□□□ -0.26
NKX2-1P43699 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC13.43□□□□□ -0.26
NKX2-1P43699 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
NKX2-1P43699 MIR4492-201ENST00000581627 80 ntBASIC13.43□□□□□ -0.26
NKX2-1P43699 SIGLEC16-201ENST00000599858 1437 ntBASIC13.43□□□□□ -0.26
NKX2-1P43699 COPE-211ENST00000600932 1144 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX2-1P43699 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX2-1P43699 AC083849.1-201ENST00000615227 514 ntBASIC13.43□□□□□ -0.26
NKX2-1P43699 AC010654.1-201ENST00000615722 808 ntBASIC13.43□□□□□ -0.26
NKX2-1P43699 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX2-1P43699 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-1P43699 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX2-1P43699 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-1P43699 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX2-1P43699 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX2-1P43699 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-1P43699 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX2-1P43699 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX2-1P43699 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.43□□□□□ -0.26
NKX2-1P43699 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX2-1P43699 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-1P43699 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX2-1P43699 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.43□□□□□ -0.26
NKX2-1P43699 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.43□□□□□ -0.26
NKX2-1P43699 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-1P43699 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
NKX2-1P43699 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.43□□□□□ -0.26
NKX2-1P43699 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
NKX2-1P43699 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
NKX2-1P43699 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
NKX2-1P43699 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
NKX2-1P43699 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX2-1P43699 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.42□□□□□ -0.26
NKX2-1P43699 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
NKX2-1P43699 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX2-1P43699 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
NKX2-1P43699 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX2-1P43699 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX2-1P43699 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX2-1P43699 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX2-1P43699 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC13.42□□□□□ -0.26
NKX2-1P43699 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC13.42□□□□□ -0.26
NKX2-1P43699 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC13.42□□□□□ -0.26
NKX2-1P43699 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC13.42□□□□□ -0.26
NKX2-1P43699 AP000867.4-201ENST00000641616 219 ntBASIC13.42□□□□□ -0.26
NKX2-1P43699 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
NKX2-1P43699 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
NKX2-1P43699 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC13.42□□□□□ -0.26
NKX2-1P43699 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC13.42□□□□□ -0.26
NKX2-1P43699 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
NKX2-1P43699 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
NKX2-1P43699 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
NKX2-1P43699 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.41□□□□□ -0.26
NKX2-1P43699 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.41□□□□□ -0.26
NKX2-1P43699 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
NKX2-1P43699 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-1P43699 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-1P43699 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-1P43699 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.41□□□□□ -0.26
NKX2-1P43699 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-1P43699 AC006486.2-201ENST00000624246 2199 ntBASIC13.41□□□□□ -0.26
NKX2-1P43699 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC13.41□□□□□ -0.26
NKX2-1P43699 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-1P43699 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.41□□□□□ -0.26
NKX2-1P43699 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-1P43699 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
NKX2-1P43699 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-1P43699 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-1P43699 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-1P43699 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
NKX2-1P43699 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms