Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
COL18A1P39060 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
COL18A1P39060 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL18A1P39060 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC21.08■□□□□ 0.96
COL18A1P39060 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC21.08■□□□□ 0.96
COL18A1P39060 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC21.08■□□□□ 0.96
COL18A1P39060 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 UBALD1-205ENST00000590891 2641 ntBASIC21.07■□□□□ 0.96
COL18A1P39060 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC21.07■□□□□ 0.96
COL18A1P39060 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
COL18A1P39060 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC21.07■□□□□ 0.96
COL18A1P39060 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
COL18A1P39060 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
COL18A1P39060 AC009486.1-201ENST00000569860 813 ntBASIC21.07■□□□□ 0.96
COL18A1P39060 LARP4-220ENST00000615080 856 ntTSL 5 BASIC21.07■□□□□ 0.96
COL18A1P39060 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC21.07■□□□□ 0.96
COL18A1P39060 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC21.07■□□□□ 0.96
COL18A1P39060 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC21.07■□□□□ 0.96
COL18A1P39060 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL18A1P39060 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL18A1P39060 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.06■□□□□ 0.96
COL18A1P39060 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC21.06■□□□□ 0.96
COL18A1P39060 AP001094.4-201ENST00000579008 2176 ntBASIC21.06■□□□□ 0.96
COL18A1P39060 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC21.06■□□□□ 0.96
COL18A1P39060 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC21.06■□□□□ 0.96
COL18A1P39060 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL18A1P39060 CYP2AB1P-202ENST00000454440 1456 ntBASIC21.06■□□□□ 0.96
COL18A1P39060 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL18A1P39060 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC21.06■□□□□ 0.96
COL18A1P39060 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC21.06■□□□□ 0.96
COL18A1P39060 GPX4-206ENST00000588919 803 ntTSL 2 BASIC21.06■□□□□ 0.96
COL18A1P39060 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC21.06■□□□□ 0.96
COL18A1P39060 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC21.06■□□□□ 0.96
COL18A1P39060 AL118558.3-201ENST00000607414 1079 ntBASIC21.06■□□□□ 0.96
COL18A1P39060 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL18A1P39060 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC21.06■□□□□ 0.96
COL18A1P39060 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
COL18A1P39060 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL18A1P39060 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC21.06■□□□□ 0.96
COL18A1P39060 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC21.06■□□□□ 0.96
COL18A1P39060 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
COL18A1P39060 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC21.05■□□□□ 0.96
COL18A1P39060 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL18A1P39060 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
COL18A1P39060 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL18A1P39060 GUK1-206ENST00000366723 845 ntTSL 5 BASIC21.05■□□□□ 0.96
COL18A1P39060 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL18A1P39060 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
COL18A1P39060 CALR4P-201ENST00000431943 946 ntBASIC21.05■□□□□ 0.96
COL18A1P39060 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC21.05■□□□□ 0.96
COL18A1P39060 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC21.05■□□□□ 0.96
COL18A1P39060 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC21.05■□□□□ 0.96
COL18A1P39060 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL18A1P39060 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC21.05■□□□□ 0.96
COL18A1P39060 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL18A1P39060 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC21.05■□□□□ 0.96
COL18A1P39060 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL18A1P39060 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC21.05■□□□□ 0.96
COL18A1P39060 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL18A1P39060 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL18A1P39060 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC21.05■□□□□ 0.96
COL18A1P39060 AL590640.2-201ENST00000457038 527 ntBASIC21.05■□□□□ 0.96
COL18A1P39060 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
COL18A1P39060 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
COL18A1P39060 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC21.05■□□□□ 0.96
COL18A1P39060 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC21.05■□□□□ 0.96
COL18A1P39060 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
COL18A1P39060 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL18A1P39060 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
COL18A1P39060 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
COL18A1P39060 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 REXO1L1P-202ENST00000608646 1974 ntBASIC21.04■□□□□ 0.96
COL18A1P39060 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC21.04■□□□□ 0.96
COL18A1P39060 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC21.04■□□□□ 0.96
COL18A1P39060 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
COL18A1P39060 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL18A1P39060 IGHJ2P-201ENST00000454480 60 ntBASIC21.04■□□□□ 0.96
COL18A1P39060 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms